BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0693800 Os11g0693800|AK061978
         (75 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0693800  Conserved hypothetical protein                      157   2e-39
Os12g0566300  Similar to ATP citrate lyase beta (Fragment)        137   2e-33
AK110061                                                           76   4e-15

>Os11g0693800 Conserved hypothetical protein
          Length = 75

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  HSSFQNFKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGG 60
          HSSFQNFKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGG
Sbjct: 1  HSSFQNFKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGG 60

Query: 61 ASVIYADTIWDMLQN 75
          ASVIYADTIWDMLQN
Sbjct: 61 ASVIYADTIWDMLQN 75



>Os12g0566300 Similar to ATP citrate lyase beta (Fragment)
          Length = 423

 Score =  137 bits (344), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/71 (83%), Positives = 68/71 (95%)

Query: 2   SSFQNFKKWGNIEFPLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGA 61
           ++F+NFKKWGNI+FPLPFGRVLS +E FIH+LDEKTS+SLKFTVLNPKGRIWTMVAGGGA
Sbjct: 222 AAFKNFKKWGNIQFPLPFGRVLSPSESFIHELDEKTSSSLKFTVLNPKGRIWTMVAGGGA 281

Query: 62  SVIYADTIWDM 72
           SVIYADT+ D+
Sbjct: 282 SVIYADTVGDL 292



>AK110061 
          Length = 1151

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 40/54 (74%)

Query: 16  PLPFGRVLSSTEGFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTI 69
           P PFGR L+  E +I  LD  T ASLK TVLN  GRIWTMVAGGGASV+Y+D I
Sbjct: 282 PAPFGRDLTKEEAYIAKLDAGTGASLKLTVLNATGRIWTMVAGGGASVVYSDAI 335



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,783,951
Number of extensions: 87327
Number of successful extensions: 211
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 3
Length of query: 75
Length of database: 17,035,801
Length adjustment: 46
Effective length of query: 29
Effective length of database: 14,633,957
Effective search space: 424384753
Effective search space used: 424384753
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)