Os12g0566300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP citrate lyase beta (Fragment).
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Os12g0566300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP citrate lyase beta (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.23 | 0.287 | 11.3 | -0.453 | 0.838 | 0.2 | 0.288 | -2.18 | -0.13 | 13.6 | 29.77 | 2103 | -- | -- |
| 43.59 | 0.31 | 11.3 | -0.617 | 0.886 | 0.172 | 0.443 | -- | -0.202 | 13.2 | 29.77 | 2103 | -- | -- |
| 37.28 | 0.284 | 11.3 | -0.439 | 0.86 | 0.189 | -- | -2.27 | -0.125 | 13.6 | 29.77 | 1963 | -- | -- |
| 40.9 | 0.298 | 11.3 | -0.777 | 0.815 | 0.453 | -- | -- | -0.211 | 13.4 | 16.27 | 47520 | -- | -- |
| 75.63 | 0.405 | 11.2 | -0.405 | -- | 0.425 | -- | -2.08 | -0.0738 | -- | 37 | 2657 | -- | -- |
| 44.82 | 0.314 | 11.3 | -0.624 | 0.804 | -- | 0.422 | -- | -0.205 | 13.3 | -- | -- | -- | -- |
| 45.55 | 0.316 | 11.3 | -0.61 | 0.804 | -- | -- | -- | -0.202 | 13.3 | -- | -- | -- | -- |
| 65.86 | 0.38 | 11.3 | -0.659 | -- | -0.469 | -- | -- | -0.196 | -- | 15.6 | 47258 | -- | -- |
| 51.7 | 0.335 | 11.3 | -- | 0.815 | 0.464 | -- | -- | -0.203 | 13.4 | 60.02 | 47520 | -- | -- |
| 85.4 | 0.432 | 11.3 | -0.641 | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
| 55.34 | 0.348 | 11.3 | -- | 0.814 | -- | -- | -- | -0.134 | 13.3 | -- | -- | -- | -- |
| 77.31 | 0.411 | 11.3 | -- | -- | -0.462 | -- | -- | -0.123 | -- | 15.6 | 47258 | -- | -- |
| 96.23 | 0.458 | 11.3 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 36.27 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 1 |
| 8 | 36.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 10 | 37.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 14 | 37.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 20 | 37.21 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 22 | 37.24 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 24 | 37.28 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 30 | 37.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 43 | 37.48 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 56 | 37.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 21 |
| 65 | 37.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 67 | 37.58 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 9 |
| 73 | 37.60 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 118 | 37.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 120 | 37.79 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 144 | 37.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 152 | 37.92 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 177 | 38.07 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 184 | 38.12 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 185 | 38.12 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 204 | 38.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 211 | 38.24 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 22 | NA |
| 212 | 38.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 223 | 38.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 228 | 38.28 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 234 | 38.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 236 | 38.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 239 | 38.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 240 | 38.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 246 | 38.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 265 | 38.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 268 | 38.32 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 271 | 38.34 | radiation | 10 | 1440 | < th | dose independent | sin | 13 | NA |
| 307 | 38.37 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 350 | 38.40 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 450 | 38.54 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 476 | 38.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 479 | 38.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 483 | 38.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 492 | 38.59 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 496 | 38.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 543 | 38.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 582 | 38.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 611 | 38.62 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 628 | 38.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 643 | 38.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 711 | 38.72 | radiation | 30 | 10 | < th | dose independent | rect. | 6 | 12 |
| 735 | 38.73 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 746 | 38.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 747 | 38.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 748 | 38.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 754 | 38.74 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 782 | 38.75 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 787 | 38.75 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 807 | 38.76 | temperature | 25 | 30 | > th | dose dependent | sin | 1 | NA |
| 810 | 38.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 819 | 38.77 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 832 | 38.78 | radiation | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 859 | 38.79 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 861 | 38.79 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 866 | 38.79 | radiation | 30 | 10 | < th | dose independent | rect. | 19 | 23 |
| 868 | 38.79 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 901 | 38.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 911 | 38.82 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 925 | 38.83 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 966 | 38.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 995 | 38.88 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 1000 | 38.88 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 20 |