Os11g0693800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0693800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.37 | 0.442 | 10.9 | -1.48 | 0.0793 | -0.903 | 0.604 | 0.788 | -0.217 | 5.35 | 48 | 1371 | -- | -- |
| 89.35 | 0.44 | 10.8 | -1.39 | 0.0753 | -0.848 | 0.6 | -- | -0.202 | 5.46 | 47.11 | 1359 | -- | -- |
| 89.27 | 0.44 | 10.9 | -1.47 | 0.0858 | -0.908 | -- | 0.748 | -0.22 | 5.32 | 47.37 | 1370 | -- | -- |
| 90.14 | 0.442 | 10.8 | -1.38 | 0.0738 | -0.861 | -- | -- | -0.202 | 6.26 | 47.96 | 1344 | -- | -- |
| 89.57 | 0.441 | 10.9 | -1.47 | -- | -0.935 | -- | 0.756 | -0.218 | -- | 45.01 | 1343 | -- | -- |
| 107.04 | 0.485 | 10.8 | -1.33 | 0.151 | -- | 0.633 | -- | -0.164 | 4.49 | -- | -- | -- | -- |
| 108.1 | 0.487 | 10.8 | -1.33 | 0.155 | -- | -- | -- | -0.167 | 4.12 | -- | -- | -- | -- |
| 90.44 | 0.443 | 10.8 | -1.38 | -- | -0.869 | -- | -- | -0.201 | -- | 48 | 1343 | -- | -- |
| 137.09 | 0.545 | 10.8 | -- | 0.116 | -1.26 | -- | -- | -0.206 | 5.65 | 80.1 | 1423 | -- | -- |
| 109.4 | 0.489 | 10.8 | -1.33 | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
| 154.96 | 0.582 | 10.8 | -- | 0.129 | -- | -- | -- | -0.0188 | 4.29 | -- | -- | -- | -- |
| 136.93 | 0.545 | 10.8 | -- | -- | -1.13 | -- | -- | -0.173 | -- | 81 | 1371 | -- | -- |
| 155.85 | 0.583 | 10.8 | -- | -- | -- | -- | -- | -0.016 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.56 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 18 | 85.99 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 27 | 86.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 32 | 86.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 42 | 86.40 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 123 | 87.88 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 16 |
| 125 | 87.93 | humidity | 90 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 132 | 88.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 148 | 88.13 | humidity | 50 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 193 | 88.44 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 205 | 88.49 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 222 | 88.56 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 241 | 88.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 285 | 88.72 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 295 | 88.75 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 316 | 88.80 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 324 | 88.82 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 374 | 88.91 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 379 | 88.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 380 | 88.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 382 | 88.94 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 405 | 88.96 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 409 | 88.97 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 421 | 89.01 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 430 | 89.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 475 | 89.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 500 | 89.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 573 | 89.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 599 | 89.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 870 | 89.76 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 916 | 89.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |