BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0678200 Os11g0678200|AK108189
(140 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0678200 Conserved hypothetical protein 283 4e-77
Os07g0528100 Reverse transcriptase, RNA-dependent DNA polym... 67 5e-12
Os08g0508300 63 6e-11
>Os11g0678200 Conserved hypothetical protein
Length = 140
Score = 283 bits (723), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MASSASWPAFGVSPEEAGKGKWYIATAATNHMTNDKSLISDLKPVADGRNIIADGNGAGL 60
MASSASWPAFGVSPEEAGKGKWYIATAATNHMTNDKSLISDLKPVADGRNIIADGNGAGL
Sbjct: 1 MASSASWPAFGVSPEEAGKGKWYIATAATNHMTNDKSLISDLKPVADGRNIIADGNGAGL 60
Query: 61 KVQGRGAVNTETVVLPAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVV 120
KVQGRGAVNTETVVLPAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVV
Sbjct: 61 KVQGRGAVNTETVVLPAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVV 120
Query: 121 GKARRSGGVYEVEFLKVPLN 140
GKARRSGGVYEVEFLKVPLN
Sbjct: 121 GKARRSGGVYEVEFLKVPLN 140
>Os07g0528100 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 1187
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Query: 12 VSPEEAGKGKWYIATAATNHMTNDKSLISDLKPVADGRNIIADGNGAGLKVQGRGAV--- 68
V+ EE +W++ T ATNHMT +S +DL G + G+G+ + ++GRG V
Sbjct: 130 VAEEEDNTTEWFLDTGATNHMTGSRSAFADLDTGVVG--TVKFGDGSVVDIRGRGTVLFQ 187
Query: 69 --NTETVVLPAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVVGKARRS 126
N + L A V+++P++ +N++S+ +L+ G I GVCT+ R DG ++ K +RS
Sbjct: 188 CKNGDHRSLEA-VYFIPKLCKNIISIGRLDARGYDAHIYHGVCTL-RDPDGLLLAKVKRS 245
>Os08g0508300
Length = 1809
Score = 63.2 bits (152), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 17 AGKGKWYIATAATNHMTNDKSLISDLKPVADGR-NIIADGNGAGLKVQGRGAVNTETVVL 75
+G W I + TNHMT ++S+ S L P + NI+ NG G KV G G + +
Sbjct: 714 SGGRSWVIDSGCTNHMTGEESMFSTLDPNGTSQDNIVFGDNGKG-KVMGLGNIAISNDLS 772
Query: 76 PAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVVGKARRSGGVYEVEF 134
A V V ++ NL+SV QL +G + TV R +D SVV K G +Y V+F
Sbjct: 773 IANVLLVKSLNYNLLSVSQLCSMGYNCLFTDVDVTVYRRNDSSVVFKGVLKGKLYLVDF 831
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,140,671
Number of extensions: 212504
Number of successful extensions: 835
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 4
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 150 (62.4 bits)