FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0528100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0252) R2 : 0.00412
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0728 (0.053) R2dN8 : 0.00532 R2N8 : 0.00412
σ : 0.474
deviance : 103.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.01 0.463 3.3 -0.383 0.126 0.102 -0.604 -1.75 -0.0402 7.56 20.9 1029 -- --
101.51 0.473 3.27 -0.207 0.108 0.0667 -0.104 -- 0.0498 4.5 18.44 266 -- --
97.65 0.46 3.3 -0.372 0.138 0.112 -- -1.44 -0.0395 7.54 20.66 1067 -- --
101.4 0.472 3.26 -0.204 0.102 0.0937 -- -- 0.0511 5.49 35.3 173 -- --
98.35 0.462 3.3 -0.378 -- 0.0731 -- -1.44 -0.0376 -- 20.97 1153 -- --
101.69 0.473 3.26 -0.203 0.0992 -- 0.000609 -- 0.0486 6.7 -- -- -- --
101.69 0.472 3.26 -0.203 0.0992 -- -- -- 0.0486 6.7 -- -- -- --
101.76 0.47 3.26 -0.187 -- -0.103 -- -- 0.0644 -- 31.07 690 -- --
102.49 0.472 3.26 -- 0.124 0.141 -- -- 0.0623 5.49 37.02 232 -- --
102.21 0.472 3.27 -0.201 -- -- -- -- 0.0506 -- -- -- -- --
102.78 0.474 3.26 -- 0.0967 -- -- -- 0.0712 6.83 -- -- -- --
102.64 0.472 3.26 -- -- -0.101 -- -- 0.0852 -- 30.01 690 -- --
103.27 0.474 3.26 -- -- -- -- -- 0.0728 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.62 radiation 40.0 720 < th dose dependent rect. 17 8
3 94.79 atmosphere 1005.0 90 > th dose independent rect. 1 2
6 95.12 atmosphere 1005.0 90 > th dose dependent rect. 1 2
7 95.12 radiation 1.0 720 > th dose dependent rect. 15 2
8 95.24 radiation 1.0 43200 < th dose dependent rect. 3 1
25 95.44 humidity 50.0 720 > th dose independent rect. 17 8
29 95.55 wind 9.0 10 < th dose independent rect. 3 23
31 95.61 wind 1.0 10 < th dose dependent rect. 2 1
32 95.66 wind 3.0 10 < th dose independent rect. 2 1
34 95.69 temperature 25.0 10 < th dose independent rect. 2 1
42 95.83 radiation 10.0 720 > th dose independent rect. 15 2
43 95.83 temperature 25.0 10 > th dose independent rect. 23 12
48 95.91 temperature 30.0 10 < th dose dependent rect. 2 1
71 95.98 wind 9.0 10 < th dose dependent rect. 2 1
76 96.00 temperature 10.0 10 > th dose independent rect. 2 1
79 96.00 humidity 50.0 10 > th dose independent rect. 2 1
83 96.00 atmosphere 1010.0 10 < th dose independent rect. 2 1
85 96.00 radiation 1.0 10 < th dose independent rect. 2 1
90 96.00 precipitation 0.1 10 < th dose independent rect. 2 1
91 96.00 temperature 10.0 10 > th dose independent rect. 3 23
93 96.00 radiation 1.0 10 < th dose dependent rect. 2 1
98 96.00 precipitation 0.1 10 < th dose dependent rect. 2 1
101 96.02 wind 1.0 30 < th dose dependent rect. 22 5
110 96.09 wind 1.0 30 < th dose dependent rect. 17 10
113 96.11 wind 5.0 90 < th dose dependent rect. 1 2
132 96.14 atmosphere 995.0 10 > th dose independent rect. 3 23
136 96.15 temperature 10.0 10 > th dose dependent rect. 2 1
140 96.17 atmosphere 1015.0 10 < th dose dependent rect. 2 1
155 96.18 radiation 10.0 720 < th dose independent rect. 15 9
156 96.18 humidity 50.0 720 > th dose independent rect. 17 16
163 96.19 radiation 1.0 90 > th dose dependent rect. 16 3
173 96.21 wind 1.0 30 > th dose independent rect. 2 1
178 96.23 humidity 90.0 90 < th dose independent rect. 1 2
179 96.23 atmosphere 1015.0 720 < th dose independent rect. 3 2
200 96.24 humidity 50.0 10 > th dose dependent rect. 2 1
220 96.30 radiation 20.0 720 < th dose independent rect. 17 8
223 96.31 wind 7.0 90 < th dose independent rect. 3 12
229 96.32 temperature 10.0 30 > th dose dependent rect. 3 22
233 96.34 radiation 1.0 30 > th dose dependent rect. 18 1
247 96.36 wind 9.0 1440 < th dose independent rect. 3 1
248 96.36 temperature 10.0 1440 > th dose independent rect. 3 1
251 96.36 temperature 30.0 1440 < th dose independent rect. 3 1
255 96.36 humidity 50.0 1440 > th dose independent rect. 3 1
264 96.36 atmosphere 995.0 1440 > th dose independent rect. 3 1
266 96.36 radiation 1.0 1440 < th dose independent rect. 3 1
286 96.36 temperature 10.0 1440 > th dose independent rect. 4 23
290 96.36 radiation 1.0 1440 < th dose dependent rect. 3 1
301 96.37 atmosphere 1015.0 720 < th dose independent rect. 3 16
331 96.47 wind 1.0 10 < th dose independent rect. 22 5
335 96.50 precipitation 0.1 720 < th dose independent rect. 17 16
337 96.50 precipitation 0.1 720 < th dose dependent rect. 17 16
338 96.51 temperature 10.0 720 > th dose independent rect. 17 8
341 96.51 temperature 10.0 720 > th dose independent rect. 1 16
344 96.53 temperature 15.0 90 > th dose independent rect. 3 12
352 96.55 atmosphere 995.0 720 > th dose independent rect. 17 8
357 96.55 humidity 90.0 1440 > th dose dependent rect. 6 1
359 96.56 humidity 90.0 1440 < th dose independent rect. 6 1
363 96.57 atmosphere 995.0 720 > th dose independent rect. 1 16
370 96.60 wind 9.0 10 > th dose independent rect. 18 1
373 96.60 temperature 10.0 720 > th dose independent rect. 5 8
374 96.60 atmosphere 995.0 720 > th dose independent rect. 5 8
375 96.60 atmosphere 1015.0 720 < th dose independent rect. 5 8
377 96.60 temperature 10.0 720 > th dose independent rect. 13 16
378 96.60 wind 9.0 10 > th dose dependent rect. 18 1
406 96.68 wind 1.0 10 < th dose independent rect. 11 16
407 96.68 atmosphere 995.0 720 > th dose independent rect. 13 16
450 96.76 precipitation 0.1 720 < th dose independent rect. 17 22
452 96.76 precipitation 0.1 720 < th dose dependent rect. 17 22
496 96.83 precipitation 0.1 90 < th dose independent rect. 3 22
497 96.83 precipitation 0.1 90 < th dose dependent rect. 3 22
501 96.86 humidity 90.0 1440 > th dose independent rect. 6 1
507 96.86 temperature 10.0 720 > th dose dependent rect. 3 2
510 96.87 humidity 50.0 10 > th dose independent rect. 3 23
511 96.87 humidity 80.0 10 < th dose dependent rect. 16 3
512 96.88 temperature 25.0 10 > th dose independent rect. 18 17
529 96.89 humidity 60.0 270 > th dose independent rect. 12 11
533 96.91 radiation 1.0 30 > th dose independent rect. 18 1
547 96.92 temperature 30.0 90 < th dose independent rect. 15 12
548 96.92 precipitation 0.1 10 < th dose independent rect. 3 23
549 96.92 precipitation 0.1 10 < th dose dependent rect. 3 23
550 96.93 wind 9.0 720 < th dose independent rect. 15 2
560 96.96 precipitation 0.1 720 < th dose independent rect. 17 8
561 96.96 precipitation 0.1 720 < th dose independent rect. 21 8
562 96.96 precipitation 0.1 720 < th dose dependent rect. 17 8
563 96.96 precipitation 0.1 720 < th dose dependent rect. 21 8
577 96.97 precipitation 0.1 720 < th dose independent rect. 13 16
578 96.97 wind 1.0 30 < th dose dependent rect. 12 15
579 96.97 precipitation 0.1 720 < th dose dependent rect. 13 16
587 96.98 wind 9.0 90 > th dose dependent rect. 18 16
602 97.02 temperature 25.0 10 > th dose independent rect. 3 8
663 97.12 humidity 80.0 90 < th dose independent rect. 16 1
696 97.16 precipitation 0.1 720 < th dose independent rect. 9 8
706 97.16 precipitation 0.1 720 < th dose dependent rect. 9 8
728 97.22 radiation 10.0 720 < th dose independent rect. 13 17
740 97.24 wind 9.0 90 < th dose dependent rect. 3 12
741 97.25 atmosphere 995.0 720 > th dose independent rect. 17 16
743 97.25 radiation 20.0 720 < th dose dependent rect. 13 17
770 97.29 radiation 1.0 10 > th dose independent rect. 16 3
775 97.29 wind 1.0 720 > th dose independent rect. 17 7
777 97.29 wind 9.0 720 < th dose independent rect. 19 8
786 97.30 temperature 25.0 10 < th dose independent rect. 24 12
792 97.31 humidity 90.0 720 < th dose dependent rect. 15 2
797 97.32 precipitation 0.1 720 < th dose independent rect. 3 16
799 97.32 precipitation 0.1 720 < th dose dependent rect. 3 16
801 97.33 atmosphere 1015.0 720 < th dose independent rect. 2 13
802 97.33 humidity 50.0 270 > th dose dependent rect. 12 10
819 97.36 atmosphere 995.0 720 > th dose independent rect. 5 16
834 97.37 temperature 10.0 720 > th dose independent rect. 7 8
835 97.37 temperature 10.0 720 > th dose independent rect. 9 8
836 97.37 atmosphere 1015.0 720 < th dose independent rect. 7 8
837 97.37 atmosphere 1015.0 720 < th dose independent rect. 9 8
838 97.37 temperature 10.0 720 > th dose independent rect. 15 16
839 97.37 temperature 10.0 720 > th dose independent rect. 17 16
840 97.37 atmosphere 995.0 720 > th dose dependent rect. 1 1
843 97.38 atmosphere 995.0 720 > th dose independent rect. 15 16
847 97.39 atmosphere 995.0 720 > th dose independent rect. 9 8
850 97.40 humidity 50.0 720 > th dose independent rect. 16 1
853 97.40 temperature 10.0 720 > th dose independent rect. 21 8
854 97.40 temperature 30.0 720 < th dose independent rect. 21 8
855 97.40 humidity 50.0 720 > th dose independent rect. 21 8
858 97.40 atmosphere 995.0 720 > th dose independent rect. 21 8
859 97.40 radiation 20.0 720 < th dose independent rect. 21 8
864 97.40 temperature 10.0 720 > th dose independent rect. 5 16
877 97.43 atmosphere 995.0 720 > th dose independent rect. 7 8
905 97.45 humidity 60.0 720 > th dose independent rect. 13 1
907 97.45 radiation 40.0 720 < th dose dependent rect. 21 8
914 97.47 temperature 25.0 10 < th dose independent sin 7 NA
916 97.47 temperature 15.0 90 > th dose dependent rect. 3 8
918 97.48 temperature 25.0 30 > th dose independent sin 8 NA
938 97.49 humidity 90.0 90 < th dose dependent rect. 16 1
948 97.50 wind 9.0 10 < th dose dependent rect. 3 22
950 97.51 precipitation 0.1 720 < th dose independent rect. 3 2
951 97.51 humidity 60.0 720 > th dose independent rect. 12 3
956 97.51 precipitation 0.1 720 < th dose dependent rect. 3 2
972 97.53 humidity 50.0 720 > th dose independent rect. 7 8
986 97.54 temperature 30.0 30 < th dose dependent rect. 1 12
993 97.55 wind 9.0 720 < th dose independent rect. 15 16
998 97.55 atmosphere 995.0 43200 < th dose dependent rect. 10 13
999 97.56 humidity 80.0 720 < th dose independent rect. 15 2