BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0677400 Os11g0677400|AK069580
(455 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0677400 Pectinesterase inhibitor domain containing pro... 342 4e-94
Os12g0561500 Pectinesterase inhibitor domain containing pro... 93 5e-19
>Os11g0677400 Pectinesterase inhibitor domain containing protein
Length = 455
Score = 342 bits (877), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 171/191 (89%), Positives = 171/191 (89%)
Query: 252 GQAAAKPKEEDEEGGXXXXXXXXXXPKNEHHSGTMSLPDPDMIAQPVMQALNPVVKALCG 311
GQAAAKPKEEDEEGG PKNEHHSGTMSLPDPDMIAQPVMQALNPVVKALCG
Sbjct: 252 GQAAAKPKEEDEEGGSASASASTSAPKNEHHSGTMSLPDPDMIAQPVMQALNPVVKALCG 311
Query: 312 KTDHADLCESSIGXXXXXXXXXXDDIGVLRLSMNALRAKVQEAISVATNRMGAASGDEVS 371
KTDHADLCESSIG DDIGVLRLSMNALRAKVQEAISVATNRMGAASGDEVS
Sbjct: 312 KTDHADLCESSIGQLPQQPPAQLDDIGVLRLSMNALRAKVQEAISVATNRMGAASGDEVS 371
Query: 372 KDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDGFSEREGLKPI 431
KDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDGFSEREGLKPI
Sbjct: 372 KDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDGFSEREGLKPI 431
Query: 432 MGDLDKILAEL 442
MGDLDKILAEL
Sbjct: 432 MGDLDKILAEL 442
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 80/126 (63%)
Query: 1 MSPRIPTRANXXXXXXXXXXXXXXXXXXSAKCIXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MSPRIPTRAN SAKCI
Sbjct: 1 MSPRIPTRANLALAALLILLTIAATTLASAKCIAKNKPEGEEGEPSGAGAAAAHASPEKK 60
Query: 61 XGSNGGLTTMSVGESVPEIKKDSSDDGAAVNESKKPKSSGGLTTLSVDDSQAEPADSIAE 120
GSNGGLTTMSVGESVPEIKKDSSDDGAAVNESKKPKSSGGLTTLSVDDSQAEPADSIAE
Sbjct: 61 PGSNGGLTTMSVGESVPEIKKDSSDDGAAVNESKKPKSSGGLTTLSVDDSQAEPADSIAE 120
Query: 121 PVEDGT 126
PVEDGT
Sbjct: 121 PVEDGT 126
>Os12g0561500 Pectinesterase inhibitor domain containing protein
Length = 188
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Query: 305 VVKALCGKTDHADLCE-SSIGXXXXXXXXXXDDIGVLRLSMNALRAKVQEAISVATNRMG 363
+VKALC KTD+ +C+ + + D VLRL+M A+RAK A A
Sbjct: 32 LVKALCAKTDYPVVCQMTVVPPPAAGAAAKLDATAVLRLAMGAVRAKAAAAKKAAGALAA 91
Query: 364 AASGDEVSKDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDGFS 423
A ++K + DC+ YDD+ +LD AD A+ GDKDT TMLD+ARTDVDTC+ GF
Sbjct: 92 DARTPALAKPVLRDCMDSYDDIAYSLDEADKAMAAGDKDTTGTMLDTARTDVDTCDQGFE 151
Query: 424 EREG-LKPIMGDLDKILAEL 442
ER+G + P+M D LA+L
Sbjct: 152 ERDGDIPPLMSKQDAELAKL 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.126 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,564,804
Number of extensions: 291514
Number of successful extensions: 741
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 158 (65.5 bits)