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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0561500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pectinesterase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0243) R2 : 0.00304
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0603 (0.0512) R2dN8 : 0.00392 R2N8 : 0.00304
σ : 0.458
deviance : 96.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.93 0.453 3.19 0.131 0.313 -0.224 -0.334 0.0873 0.0859 1.58 9.67 9 -- --
92.95 0.449 3.19 0.127 0.311 -0.222 -0.247 -- 0.0851 1.63 9.634 8 -- --
93.1 0.449 3.19 0.141 0.306 -0.217 -- -0.108 0.0811 1.67 9.3 7 -- --
93.19 0.45 3.19 0.134 0.31 -0.219 -- -- 0.0862 1.63 9.379 7 -- --
95.37 0.457 3.19 0.118 -- -0.0236 -- -0.2 0.0755 -- 10 8 -- --
94.59 0.456 3.19 0.116 0.131 -- -0.247 -- 0.0693 4.02 -- -- -- --
94.75 0.456 3.19 0.12 0.133 -- -- -- 0.0706 4.53 -- -- -- --
95.57 0.455 3.19 0.123 -- -0.0352 -- -- 0.0743 -- 13.65 9 -- --
93.67 0.451 3.19 -- 0.303 -0.216 -- -- 0.0738 1.65 9.3 7 -- --
95.69 0.457 3.19 0.125 -- -- -- -- 0.0741 -- -- -- -- --
95.12 0.456 3.19 -- 0.135 -- -- -- 0.0573 4.51 -- -- -- --
95.96 0.456 3.19 -- -- -0.0354 -- -- 0.0614 -- 12.59 10 -- --
96.1 0.458 3.19 -- -- -- -- -- 0.0603 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.71 radiation 30.0 14400 < th dose dependent rect. 23 1
10 86.91 temperature 25.0 30 > th dose independent rect. 22 1
11 86.93 wind 3.0 30 < th dose independent rect. 22 1
12 86.93 wind 9.0 1440 < th dose independent rect. 23 1
13 86.93 temperature 10.0 1440 > th dose independent rect. 23 1
16 86.93 temperature 30.0 1440 < th dose independent rect. 23 1
20 86.93 humidity 50.0 1440 > th dose independent rect. 23 1
30 86.93 atmosphere 995.0 1440 > th dose independent rect. 23 1
31 86.93 radiation 1.0 1440 < th dose independent rect. 23 1
51 86.93 temperature 10.0 1440 > th dose independent rect. 24 23
60 86.97 humidity 80.0 30 > th dose independent rect. 22 1
61 86.97 temperature 20.0 30 > th dose dependent rect. 22 1
63 87.00 atmosphere 1005.0 30 > th dose dependent rect. 22 1
64 87.02 wind 5.0 30 < th dose dependent rect. 22 1
72 87.08 humidity 90.0 30 < th dose independent rect. 22 1
75 87.09 atmosphere 1005.0 30 > th dose independent rect. 22 1
76 87.11 wind 1.0 30 > th dose independent rect. 22 1
77 87.11 humidity 50.0 30 > th dose dependent rect. 22 1
83 87.12 temperature 10.0 30 > th dose independent rect. 22 1
85 87.12 temperature 30.0 30 < th dose independent rect. 22 1
86 87.12 humidity 50.0 30 > th dose independent rect. 22 1
89 87.12 atmosphere 995.0 30 > th dose independent rect. 22 1
90 87.12 atmosphere 1010.0 30 < th dose independent rect. 22 1
92 87.12 radiation 1.0 30 < th dose independent rect. 22 1
97 87.12 precipitation 0.1 30 < th dose independent rect. 22 1
98 87.12 temperature 10.0 30 > th dose independent rect. 23 23
99 87.12 radiation 1.0 30 < th dose dependent rect. 22 1
104 87.12 precipitation 0.1 30 < th dose dependent rect. 22 1
110 87.25 atmosphere 1015.0 30 < th dose dependent rect. 22 1
115 87.39 humidity 90.0 30 < th dose dependent rect. 22 1
116 87.48 wind 1.0 30 > th dose dependent rect. 22 1
117 87.52 temperature 30.0 30 < th dose dependent rect. 22 1
130 87.78 atmosphere 1000.0 30 > th dose independent rect. 23 23
133 87.84 wind 9.0 30 < th dose independent rect. 23 23
136 87.88 precipitation 0.1 30 < th dose independent rect. 23 23
138 87.88 precipitation 0.1 30 < th dose dependent rect. 23 23
194 89.12 atmosphere 1015.0 30 < th dose dependent rect. 2 1
195 89.14 wind 3.0 30 < th dose dependent rect. 2 1
196 89.15 wind 3.0 30 < th dose independent rect. 2 1
201 89.16 temperature 10.0 30 > th dose dependent rect. 2 1
206 89.17 atmosphere 1005.0 30 > th dose dependent rect. 2 1
208 89.18 temperature 10.0 30 > th dose independent rect. 2 1
211 89.18 temperature 25.0 30 < th dose independent rect. 2 1
213 89.18 humidity 50.0 30 > th dose independent rect. 2 1
216 89.18 atmosphere 995.0 30 > th dose independent rect. 2 1
217 89.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
219 89.18 radiation 1.0 30 < th dose independent rect. 2 1
224 89.18 precipitation 0.1 30 < th dose independent rect. 2 1
225 89.18 temperature 10.0 30 > th dose independent rect. 3 23
226 89.18 humidity 50.0 30 > th dose dependent rect. 2 1
229 89.18 radiation 1.0 30 < th dose dependent rect. 2 1
234 89.18 precipitation 0.1 30 < th dose dependent rect. 2 1
239 89.23 atmosphere 995.0 30 > th dose dependent rect. 2 1
241 89.24 precipitation 0.1 1440 < th dose independent rect. 23 1
243 89.24 precipitation 0.1 1440 < th dose dependent rect. 23 1
245 89.25 temperature 30.0 30 < th dose dependent rect. 2 1
246 89.26 atmosphere 1005.0 30 > th dose independent rect. 2 1
258 89.33 wind 9.0 30 < th dose independent rect. 3 23
264 89.38 wind 1.0 30 > th dose independent rect. 2 1
306 89.63 humidity 50.0 30 > th dose independent rect. 23 23
308 89.71 atmosphere 995.0 30 > th dose independent rect. 3 23
329 90.38 temperature 10.0 30 > th dose dependent rect. 23 23
332 90.40 temperature 25.0 270 > th dose independent rect. 19 8
333 90.41 wind 9.0 720 < th dose independent rect. 3 8
335 90.46 temperature 25.0 720 > th dose dependent rect. 3 5
338 90.52 temperature 10.0 720 > th dose independent rect. 3 8
339 90.52 atmosphere 995.0 720 > th dose independent rect. 3 8
340 90.52 temperature 10.0 720 > th dose independent rect. 11 16
342 90.53 humidity 50.0 720 > th dose independent rect. 3 8
348 90.57 precipitation 0.1 30 < th dose independent rect. 3 23
350 90.57 atmosphere 1005.0 30 > th dose dependent rect. 20 3
351 90.57 precipitation 0.1 30 < th dose dependent rect. 3 23
352 90.58 precipitation 0.1 720 < th dose independent rect. 15 8
353 90.58 precipitation 0.1 720 < th dose dependent rect. 15 8
354 90.58 radiation 20.0 10 < th dose dependent rect. 3 23
357 90.63 humidity 50.0 720 > th dose independent rect. 23 16
360 90.65 precipitation 0.1 720 < th dose independent rect. 3 8
361 90.65 radiation 10.0 10 < th dose independent rect. 23 23
362 90.65 precipitation 0.1 720 < th dose dependent rect. 3 8
363 90.66 temperature 10.0 720 > th dose independent rect. 15 8
364 90.66 temperature 10.0 720 > th dose independent rect. 23 16
365 90.66 radiation 10.0 10 < th dose independent rect. 3 23
374 90.70 atmosphere 995.0 720 > th dose independent rect. 23 16
375 90.71 temperature 25.0 270 > th dose dependent rect. 19 8
377 90.73 atmosphere 1015.0 720 < th dose independent rect. 3 8
389 90.82 atmosphere 995.0 720 > th dose independent rect. 11 16
390 90.82 radiation 20.0 10 < th dose dependent rect. 23 23
396 90.87 precipitation 0.1 720 < th dose independent rect. 23 16
398 90.87 precipitation 0.1 720 < th dose dependent rect. 23 16
428 90.93 temperature 25.0 720 > th dose independent rect. 4 4
432 90.93 precipitation 0.1 720 < th dose independent rect. 11 16
433 90.93 precipitation 0.1 720 < th dose dependent rect. 11 16
436 90.97 atmosphere 995.0 720 > th dose independent rect. 15 8
438 90.98 wind 1.0 30 > th dose independent rect. 23 23
440 90.99 radiation 1.0 14400 < th dose dependent rect. 3 1
443 91.03 wind 7.0 30 < th dose dependent rect. 20 7
447 91.04 temperature 10.0 30 > th dose dependent rect. 3 17
453 91.06 temperature 30.0 30 < th dose independent rect. 23 23
464 91.13 wind 5.0 30 < th dose dependent rect. 22 5
483 91.19 wind 9.0 1440 < th dose independent rect. 3 1
484 91.19 temperature 10.0 1440 > th dose independent rect. 3 1
487 91.19 temperature 30.0 1440 < th dose independent rect. 3 1
491 91.19 humidity 50.0 1440 > th dose independent rect. 3 1
500 91.19 atmosphere 995.0 1440 > th dose independent rect. 3 1
501 91.19 radiation 1.0 1440 < th dose independent rect. 3 1
522 91.19 temperature 10.0 1440 > th dose independent rect. 4 23
548 91.25 temperature 25.0 720 > th dose dependent rect. 24 9
554 91.27 temperature 10.0 30 > th dose dependent rect. 3 23
565 91.32 humidity 50.0 30 > th dose independent rect. 3 23
575 91.36 wind 1.0 30 < th dose independent rect. 23 4
577 91.36 wind 5.0 30 < th dose independent rect. 20 7
594 91.41 temperature 10.0 30 > th dose dependent rect. 3 19
603 91.45 wind 9.0 720 < th dose independent rect. 15 8
607 91.48 atmosphere 995.0 30 > th dose independent rect. 3 17
638 91.56 atmosphere 1015.0 30 < th dose independent rect. 20 7
645 91.58 temperature 25.0 270 > th dose dependent rect. 19 1
667 91.65 humidity 90.0 90 < th dose independent rect. 2 1
678 91.66 temperature 10.0 30 > th dose dependent rect. 20 7
682 91.68 wind 1.0 720 > th dose independent rect. 15 8
685 91.69 atmosphere 995.0 30 > th dose dependent rect. 20 7
694 91.71 humidity 80.0 30 > th dose independent rect. 20 7
708 91.74 temperature 25.0 30 > th dose independent rect. 24 11
711 91.74 humidity 50.0 30 > th dose dependent rect. 20 7
724 91.78 wind 1.0 10 < th dose independent rect. 14 13
726 91.78 wind 5.0 10 < th dose dependent rect. 14 13
733 91.80 temperature 25.0 720 < th dose independent rect. 2 7
734 91.80 atmosphere 1000.0 90 > th dose independent rect. 23 10
736 91.80 temperature 25.0 30 > th dose independent rect. 24 20
749 91.82 wind 9.0 30 < th dose independent rect. 3 17
769 91.85 precipitation 0.1 30 < th dose independent rect. 20 7
779 91.85 precipitation 0.1 30 < th dose dependent rect. 20 7
781 91.86 atmosphere 1015.0 30 < th dose independent rect. 22 5
787 91.86 temperature 15.0 90 > th dose independent rect. 3 16
795 91.87 temperature 10.0 30 > th dose independent rect. 20 7
796 91.87 temperature 30.0 30 < th dose independent rect. 20 7
797 91.87 humidity 50.0 30 > th dose independent rect. 20 7
800 91.87 atmosphere 995.0 30 > th dose independent rect. 20 7
801 91.87 radiation 1.0 30 < th dose independent rect. 20 7
808 91.87 atmosphere 1015.0 30 < th dose independent rect. 3 17
813 91.87 radiation 1.0 30 < th dose dependent rect. 20 7
818 91.87 temperature 10.0 90 > th dose dependent rect. 23 10
835 91.89 temperature 15.0 30 > th dose dependent rect. 3 6
843 91.90 humidity 90.0 30 < th dose independent rect. 20 3
852 91.91 wind 1.0 10 < th dose independent rect. 7 20
853 91.91 atmosphere 1015.0 30 < th dose independent rect. 23 23
854 91.91 temperature 10.0 720 > th dose dependent rect. 23 1
863 91.93 wind 9.0 720 < th dose independent rect. 23 16
864 91.93 atmosphere 995.0 30 > th dose independent rect. 3 19
867 91.94 atmosphere 1000.0 90 > th dose independent rect. 11 12
873 91.94 humidity 70.0 30 > th dose dependent rect. 22 5
874 91.95 atmosphere 1005.0 30 > th dose independent rect. 20 7
877 91.95 radiation 10.0 10 < th dose independent rect. 3 17
883 91.95 radiation 1.0 270 < th dose dependent rect. 5 22
890 91.97 radiation 20.0 10 < th dose independent rect. 16 17
916 92.00 precipitation 0.1 30 < th dose independent rect. 3 17
917 92.00 radiation 10.0 10 < th dose independent rect. 3 19
921 92.00 precipitation 0.1 30 < th dose dependent rect. 3 17
924 92.01 radiation 20.0 10 < th dose independent rect. 3 6
941 92.02 radiation 10.0 10 < th dose independent rect. 23 21
967 92.03 radiation 30.0 10 < th dose dependent rect. 16 17