BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0561500 Os12g0561500|Os12g0561500
         (188 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G36659.1  | chr3:2100189-2100983 FORWARD LENGTH=265             55   2e-08

>AT3G36659.1 | chr3:2100189-2100983 FORWARD LENGTH=265
          Length = 264

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 105 DCMDSYDDIAYSLDEADKAMAAGDKDTTGTMLDTARTDVDTCDQGFEERDGDIPPLMSKQ 164
           DC + YDD   +L++A  A+ + D  T  T L  A TD  TC+ GFEE  G+  PL    
Sbjct: 188 DCQELYDDAVVNLEDAVNAVKSSDIATVNTNLSAAMTDYSTCNDGFEES-GEPNPLAYVA 246

Query: 165 DAELAKLASNCIAIA 179
           D +L K+ SNC+AI+
Sbjct: 247 D-KLTKMVSNCLAIS 260



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,162,159
Number of extensions: 62142
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)