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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0677400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pectinesterase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0432) R2 : 0.531
β1 : 0.858 (0.157) R2dD : 0.0323 R2D : 0.0184
β2 : 0.523 (0.101) R2dC : 0.0275 R2C : 0.0268
β3 : -2.93 (0.176) R2dE : 0.347 R2E : 0.0884
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.8 (0.791) R2dD*E : 0.365 R2D*E : 0.11
γ1 : -0.211 (0.0941) R2dN8 : 0.00747 R2N8 : 0.0176
σ : 0.796
deviance : 292.34
__
_____
C
peak time of C : 12.8
E
wheather : wind
threshold : 6.8
memory length : 4323
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 2.94

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.06 0.803 3.56 0.849 0.526 -2.9 0.279 -13.7 -0.213 12.8 6.8 4322 19 2.95
406.64 0.939 3.56 0.882 0.52 -1.97 0.222 -- -0.171 12.7 8.093 4319 19 2.7
292.34 0.796 3.56 0.858 0.523 -2.93 -- -13.8 -0.211 12.8 6.8 4323 19 2.94
344 0.864 3.55 0.348 0.555 -3.64 -- -- -0.0934 12 7.9 4319 18.9 2.04
309.08 0.819 3.56 0.83 -- -2.95 -- -13.9 -0.218 -- 6.733 4325 19 2.95
572.29 1.12 3.54 0.65 0.601 -- 0.33 -- -0.385 12.4 -- -- -- --
572.75 1.12 3.54 0.662 0.6 -- -- -- -0.384 12.4 -- -- -- --
359.61 0.883 3.55 0.284 -- -3.74 -- -- -0.167 -- 7.9 4320 18.9 2.04
339.09 0.858 3.54 -- 0.543 -3.47 -- -- -0.188 12.8 7.907 4320 19 1.89
595.34 1.14 3.55 0.642 -- -- -- -- -0.394 -- -- -- -- --
584.32 1.13 3.55 -- 0.59 -- -- -- -0.458 12.3 -- -- -- --
335.58 0.853 3.54 -- -- -3.5 -- -- -0.216 -- 8.606 4319 19 1.85
606.22 1.15 3.56 -- -- -- -- -- -0.465 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 299.54 wind 5.0 4320 > th dose dependent rect. 20 2
4 305.15 wind 7.0 4320 < th dose independent rect. 19 3
13 307.94 wind 7.0 4320 > th dose independent rect. 18 4
27 310.95 wind 9.0 4320 > th dose dependent rect. 20 1
34 311.28 wind 7.0 4320 > th dose dependent rect. 18 7
45 312.42 wind 9.0 4320 > th dose dependent rect. 20 6
139 322.24 atmosphere 995.0 14400 < th dose independent rect. 15 3
181 322.92 atmosphere 995.0 14400 < th dose dependent rect. 15 4
184 322.96 atmosphere 995.0 14400 > th dose independent rect. 12 9
185 323.00 atmosphere 995.0 14400 > th dose independent rect. 12 6
187 323.07 atmosphere 995.0 14400 > th dose independent rect. 10 11
189 323.11 atmosphere 995.0 14400 > th dose independent rect. 10 9
250 324.12 atmosphere 995.0 14400 > th dose independent rect. 12 3
251 324.14 atmosphere 995.0 14400 > th dose independent rect. 15 3
404 335.80 atmosphere 995.0 14400 > th dose independent rect. 4 11
440 338.07 atmosphere 995.0 14400 > th dose independent rect. 19 21
448 338.54 radiation 1.0 14400 < th dose dependent rect. 23 1
466 342.41 atmosphere 995.0 14400 > th dose independent sin 4 NA
469 343.04 atmosphere 995.0 14400 < th dose dependent sin 1 NA
481 343.53 humidity 90.0 1440 < th dose dependent rect. 3 1
506 344.71 atmosphere 995.0 14400 < th dose independent sin 4 NA
516 345.55 radiation 1.0 14400 < th dose dependent rect. 23 3
530 346.50 atmosphere 995.0 14400 < th dose dependent rect. 4 18
575 347.53 radiation 1.0 14400 < th dose dependent rect. 23 5
597 348.25 precipitation 0.1 14400 > th dose dependent rect. 20 1
631 349.59 radiation 1.0 14400 < th dose dependent rect. 19 7
663 351.01 atmosphere 995.0 14400 > th dose independent rect. 7 21
664 351.01 atmosphere 995.0 14400 > th dose independent rect. 3 22
667 351.02 atmosphere 995.0 14400 > th dose independent rect. 24 21
714 351.12 atmosphere 995.0 14400 > th dose independent no NA NA
720 351.12 atmosphere 995.0 14400 > th dose independent rect. 14 23
729 351.13 atmosphere 995.0 14400 > th dose independent rect. 10 23
735 351.14 atmosphere 995.0 14400 > th dose independent rect. 12 23
809 352.17 radiation 1.0 14400 < th dose dependent rect. 19 9
822 352.66 atmosphere 995.0 14400 > th dose independent rect. 14 14
854 352.93 atmosphere 995.0 14400 < th dose independent rect. 14 13
943 353.05 atmosphere 995.0 14400 < th dose independent no NA NA