BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0677400 Os11g0677400|AK069580
         (455 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G36659.1  | chr3:2100189-2100983 FORWARD LENGTH=265             72   8e-13
AT1G02550.1  | chr1:536483-537211 FORWARD LENGTH=243               55   8e-08

>AT3G36659.1 | chr3:2100189-2100983 FORWARD LENGTH=265
          Length = 264

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 302 LNPVVKALCGKTDHADLCESSIGXXXXXXXXXXDDIGVLRLSMNALRAKVQEAISVATNR 361
           L+P +K +CGKTD+  LCESS+               VL L++ A     + A+++    
Sbjct: 126 LSPEIKTICGKTDNPPLCESSVSPLLTPQLKPNTS-SVLILAIQASITATKAAMAI---- 180

Query: 362 MGAASGDEVSKDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCEDG 421
                   V K    DC ++YDD   NL+ A  A+K  D  T +T L +A TD  TC DG
Sbjct: 181 --------VEKVDASDCQELYDDAVVNLEDAVNAVKSSDIATVNTNLSAAMTDYSTCNDG 232

Query: 422 FSEREGLKPIMGDLDKI 438
           F E     P+    DK+
Sbjct: 233 FEESGEPNPLAYVADKL 249



>AT1G02550.1 | chr1:536483-537211 FORWARD LENGTH=243
          Length = 242

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 302 LNPVVKALCGKTDHADLCESSI-GXXXXXXXXXXDDIGVLRLSMNALRAKVQEAISVATN 360
           ++P V ++C  TD+A  C  SI              I VLR+ M+AL  K    + +A  
Sbjct: 88  VSPAVGSVCSNTDYAAECIVSILPLLRDFRKFEPKPIDVLRMEMSALYEKANATLDLAKR 147

Query: 361 RMGAASGDEVSKDAMGDCLQMYDDMKSNLDSADAALKKGDKDTAHTMLDSARTDVDTCED 420
            +   S      D +  C+  Y+ +  +L  A  A+  GD +   +++ +A  DV TC D
Sbjct: 148 LIVDKSTPRDVADVLDLCVDNYESLLDDLKDASVAVDDGDFERLESVVSAAIADVVTCSD 207

Query: 421 GFSEREGLKPIMGDLDKILAEL 442
            F+E   L+  M ++D  L +L
Sbjct: 208 AFAESSELESPMANVDDFLKKL 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.126    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,302,468
Number of extensions: 175088
Number of successful extensions: 537
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 4
Length of query: 455
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,310,137
Effective search space: 2933478361
Effective search space used: 2933478361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 113 (48.1 bits)