BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0667400 Os11g0667400|Os11g0667400
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0667400 Similar to Ubiquitin carboxyl-terminal hydrola... 247 2e-66
Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 87 4e-18
>Os11g0667400 Similar to Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)
(Ubiquitin thiolesterase 11) (Ubiquitin-specific
processing protease 11) (Deubiquitinating enzyme 11)
Length = 119
Score = 247 bits (630), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MPLVGQYDTSMLKSLSEIHKLELIPKGNEDYVALHGYLEAFLKVEQLDPEDNVVLPMLQK 60
MPLVGQYDTSMLKSLSEIHKLELIPKGNEDYVALHGYLEAFLKVEQLDPEDNVVLPMLQK
Sbjct: 1 MPLVGQYDTSMLKSLSEIHKLELIPKGNEDYVALHGYLEAFLKVEQLDPEDNVVLPMLQK 60
Query: 61 ASTSDEEIRSVEATGSSGHSSQKHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE 119
ASTSDEEIRSVEATGSSGHSSQKHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE
Sbjct: 61 ASTSDEEIRSVEATGSSGHSSQKHEEGKGWYKFDDECVRPITEDSIKTPAAYVLFYTRE 119
>Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 911
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 45/57 (78%)
Query: 4 VGQYDTSMLKSLSEIHKLELIPKGNEDYVALHGYLEAFLKVEQLDPEDNVVLPMLQK 60
VGQYDTSMLKSL EIHKLELIPKGNED VALHG LEAFLK E L PED P +K
Sbjct: 709 VGQYDTSMLKSLPEIHKLELIPKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKK 765
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 33/37 (89%), Gaps = 2/37 (5%)
Query: 78 GH--SSQKHEEGKGWYKFDDECVRPITEDSIKTPAAY 112
GH +S HEEGKGWYKFDDECVRPITEDSIKTPAAY
Sbjct: 842 GHYTASIYHEEGKGWYKFDDECVRPITEDSIKTPAAY 878
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,099,442
Number of extensions: 153807
Number of successful extensions: 423
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 3
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)