BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0660000 Os11g0660000|AK066709
         (523 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0660000  Sodium/calcium exchanger membrane region domai...   984   0.0  
Os02g0644900  Sodium/calcium exchanger membrane region domai...   386   e-107
Os02g0644801  Conserved hypothetical protein                      135   6e-32

>Os11g0660000 Sodium/calcium exchanger membrane region domain containing protein
          Length = 523

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/523 (93%), Positives = 489/523 (93%)

Query: 1   MANINMADTVPSCDTYLLFNGETLLPIGVRAFIYTAVLAYCFIGLSAITGRFFKSMESIM 60
           MANINMADTVPSCDTYLLFNGETLLPIGVRAFIYTAVLAYCFIGLSAITGRFFKSMESIM
Sbjct: 1   MANINMADTVPSCDTYLLFNGETLLPIGVRAFIYTAVLAYCFIGLSAITGRFFKSMESIM 60

Query: 61  RHSREVVTVDPHTNATIVKHEKVWNYTIADVALLAFGTSFPQISLATIDAIRNLGQLTAG 120
           RHSREVVTVDPHTNATIVKHEKVWNYTIADVALLAFGTSFPQISLATIDAIRNLGQLTAG
Sbjct: 61  RHSREVVTVDPHTNATIVKHEKVWNYTIADVALLAFGTSFPQISLATIDAIRNLGQLTAG 120

Query: 121 GLGPGTLVGSAAFDLFPIHAVCVVMPRAGSKKKISDLGVWLVELFWSFWAYIWLYIILEV 180
           GLGPGTLVGSAAFDLFPIHAVCVVMPRAGSKKKISDLGVWLVELFWSFWAYIWLYIILEV
Sbjct: 121 GLGPGTLVGSAAFDLFPIHAVCVVMPRAGSKKKISDLGVWLVELFWSFWAYIWLYIILEV 180

Query: 181 WTPRVITLWEAXXXXXXXXXXXXHAYAQDKRWPYVSIPLARGERPEDWVPAEDASVXXXX 240
           WTPRVITLWEA            HAYAQDKRWPYVSIPLARGERPEDWVPAEDASV    
Sbjct: 181 WTPRVITLWEALLTVLQYGLLLLHAYAQDKRWPYVSIPLARGERPEDWVPAEDASVDYDD 240

Query: 241 XXXXXXXXLPGQNEDIVDIFSAHSYSNEGYHHXXXXXXXXXXTGLTLKNKWEDTHWFSIW 300
                   LPGQNEDIVDIFSAHSYSNEGYHH          TGLTLKNKWEDTHWFSIW
Sbjct: 241 NYDGIGDILPGQNEDIVDIFSAHSYSNEGYHHVSEEDVEESSTGLTLKNKWEDTHWFSIW 300

Query: 301 WQQFVDAATLESSVSRKMDSTCLRVIGISWNLIIAPWKMLFAFVPPYEIAHGWIAFICSL 360
           WQQFVDAATLESSVSRKMDSTCLRVIGISWNLIIAPWKMLFAFVPPYEIAHGWIAFICSL
Sbjct: 301 WQQFVDAATLESSVSRKMDSTCLRVIGISWNLIIAPWKMLFAFVPPYEIAHGWIAFICSL 360

Query: 361 IFISGIAYGVTKITDQISCVTGVSPYVIAFTALAAGTSWPDLVASKIAAERQITADSAIT 420
           IFISGIAYGVTKITDQISCVTGVSPYVIAFTALAAGTSWPDLVASKIAAERQITADSAIT
Sbjct: 361 IFISGIAYGVTKITDQISCVTGVSPYVIAFTALAAGTSWPDLVASKIAAERQITADSAIT 420

Query: 421 NITCSNSVNIYVGIGVPWLVDTMYNYFVYQKPLYIDNAAGLSFSLLVFFATSFGCITVLV 480
           NITCSNSVNIYVGIGVPWLVDTMYNYFVYQKPLYIDNAAGLSFSLLVFFATSFGCITVLV
Sbjct: 421 NITCSNSVNIYVGIGVPWLVDTMYNYFVYQKPLYIDNAAGLSFSLLVFFATSFGCITVLV 480

Query: 481 LRRVILGAELGGPRMWAWATSVYFMILWVVFVVLSSLKISGVI 523
           LRRVILGAELGGPRMWAWATSVYFMILWVVFVVLSSLKISGVI
Sbjct: 481 LRRVILGAELGGPRMWAWATSVYFMILWVVFVVLSSLKISGVI 523



>Os02g0644900 Sodium/calcium exchanger membrane region domain containing protein
          Length = 227

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/217 (87%), Positives = 191/217 (88%)

Query: 208 QDKRWPYVSIPLARGERPEDWVPAEDASVXXXXXXXXXXXXLPGQNEDIVDIFSAHSYSN 267
           QDKRWPYVSIPLARG+RPEDWVP EDASV            LPGQNEDIVDIFSA SYSN
Sbjct: 1   QDKRWPYVSIPLARGDRPEDWVPTEDASVDYDDNYDGIGDILPGQNEDIVDIFSARSYSN 60

Query: 268 EGYHHXXXXXXXXXXTGLTLKNKWEDTHWFSIWWQQFVDAATLESSVSRKMDSTCLRVIG 327
           EGYHH          TGLTLKNKWEDTHWFSIWWQQFVDAATLESSVSRKMDSTCL VIG
Sbjct: 61  EGYHHVSEKDVEESPTGLTLKNKWEDTHWFSIWWQQFVDAATLESSVSRKMDSTCLSVIG 120

Query: 328 ISWNLIIAPWKMLFAFVPPYEIAHGWIAFICSLIFISGIAYGVTKITDQISCVTGVSPYV 387
           ISWNLIIAPWKMLFAF+PPYEIAHGWIAFICSLIFISGIAYGVTKITDQISCVTGVSPYV
Sbjct: 121 ISWNLIIAPWKMLFAFIPPYEIAHGWIAFICSLIFISGIAYGVTKITDQISCVTGVSPYV 180

Query: 388 IAFTALAAGTSWPDLVASKIAAERQITADSAITNITC 424
           IAFTALAAGTSWPDLVASKIAAERQITADSAI NITC
Sbjct: 181 IAFTALAAGTSWPDLVASKIAAERQITADSAIANITC 217



>Os02g0644801 Conserved hypothetical protein
          Length = 109

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 67/67 (100%)

Query: 447 FVYQKPLYIDNAAGLSFSLLVFFATSFGCITVLVLRRVILGAELGGPRMWAWATSVYFMI 506
           FVY+KPLYIDNAAGLSFSLLVFFATSFGCITVLVLRRVILGAELGGPRMWAWATSVYFMI
Sbjct: 9   FVYKKPLYIDNAAGLSFSLLVFFATSFGCITVLVLRRVILGAELGGPRMWAWATSVYFMI 68

Query: 507 LWVVFVV 513
           LWVVFV+
Sbjct: 69  LWVVFVI 75



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,408,222
Number of extensions: 616081
Number of successful extensions: 1498
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 3
Length of query: 523
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 418
Effective length of database: 11,553,331
Effective search space: 4829292358
Effective search space used: 4829292358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)