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Os02g0644900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/calcium exchanger membrane region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.84 (0.0386) R2 : 0.771
β1 : -0.74 (0.142) R2dD : 0.0145 R2D : -0.00997
β2 : 4.31 (0.117) R2dC : 0.938 R2C : 0.638
β3 : -1.77 (0.157) R2dE : 0.0877 R2E : -0.227
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.498 (0.0829) R2dN8 : 0.0247 R2N8 : 0.0306
σ : 0.721
deviance : 239.68
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C
peak time of C : 7.07
E
wheather : humidity
threshold : 75.78
memory length : 899
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.71 0.684 9.83 -0.811 4.45 -1.75 2.84 0.981 0.55 7.07 78.81 820 -- --
209.57 0.674 9.84 -0.819 4.31 -1.84 3.4 -- 0.5 7.14 75.91 905 -- --
227.82 0.703 9.84 -0.874 4.5 -1.74 -- 2.58 0.525 7.02 78.77 799 -- --
239.68 0.721 9.84 -0.74 4.31 -1.77 -- -- 0.498 7.07 75.78 899 -- --
970.8 1.46 9.92 -0.419 -- 0.501 -- -0.288 0.654 -- 78.77 799 -- --
269.07 0.769 9.84 -0.607 3.67 -- 3.07 -- 0.606 6.67 -- -- -- --
292.57 0.801 9.84 -0.562 3.68 -- -- -- 0.595 6.59 -- -- -- --
682.28 1.22 9.88 -0.127 -- 2.62 -- -- 0.844 -- 73 508 -- --
252.45 0.74 9.81 -- 4.3 -1.66 -- -- 0.623 7.07 78.51 868 -- --
999.13 1.48 9.92 -0.473 -- -- -- -- 0.67 -- -- -- -- --
300.88 0.811 9.83 -- 3.68 -- -- -- 0.658 6.6 -- -- -- --
683.51 1.22 9.88 -- -- 2.65 -- -- 0.813 -- 72.6 507 -- --
1005.02 1.48 9.9 -- -- -- -- -- 0.723 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 200.56 humidity 80 720 < th dose independent rect. 11 11
13 203.81 humidity 90 720 < th dose dependent rect. 19 2
19 204.36 humidity 80 720 > th dose independent rect. 11 15
20 204.48 humidity 90 720 < th dose dependent rect. 18 5
24 204.92 humidity 80 720 < th dose independent sin 17 NA
54 207.22 humidity 70 720 > th dose dependent rect. 11 14
58 207.39 humidity 80 720 > th dose independent sin 17 NA
106 209.16 humidity 70 720 > th dose dependent sin 17 NA
131 209.86 humidity 80 720 > th dose independent rect. 11 21
169 211.05 humidity 80 720 < th dose independent rect. 18 3
286 213.98 humidity 90 720 < th dose dependent sin 14 NA
303 214.27 humidity 80 720 > th dose independent rect. 6 21
407 215.87 humidity 80 720 < th dose independent rect. 6 16
428 216.09 humidity 80 720 > th dose independent rect. 23 23
431 216.14 humidity 80 720 > th dose dependent rect. 19 2
453 216.47 humidity 80 720 > th dose independent rect. 6 16
485 216.79 humidity 80 720 > th dose independent no NA NA
539 217.42 humidity 70 720 > th dose dependent rect. 11 21
597 218.04 humidity 80 720 > th dose independent rect. 17 23
606 218.14 humidity 80 720 > th dose independent rect. 14 23
620 218.28 humidity 80 720 > th dose independent rect. 21 23
622 218.32 humidity 80 720 < th dose independent no NA NA
688 218.94 humidity 80 720 < th dose independent rect. 16 23
696 219.06 humidity 80 1440 > th dose independent rect. 11 3
777 220.00 humidity 80 1440 < th dose independent rect. 11 3
912 221.71 humidity 90 720 < th dose dependent rect. 11 19
927 221.85 humidity 90 720 < th dose dependent rect. 11 13
973 222.34 humidity 80 1440 < th dose independent rect. 6 10
982 222.40 humidity 70 720 > th dose dependent no NA NA