Os11g0660000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/calcium exchanger membrane region domain containing protein.
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Os11g0660000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/calcium exchanger membrane region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.39 | 0.631 | 9.89 | -1.19 | 4.54 | -1.88 | 2.31 | 0.97 | 0.194 | 7.18 | 77.83 | 841 | -- | -- |
| 177.8 | 0.621 | 9.9 | -1.14 | 4.33 | -1.88 | 2.91 | -- | 0.161 | 7.26 | 76 | 950 | -- | -- |
| 191.24 | 0.644 | 9.9 | -1.24 | 4.63 | -1.84 | -- | 2.27 | 0.18 | 7.11 | 77.32 | 804 | -- | -- |
| 198.84 | 0.657 | 9.91 | -1.09 | 4.33 | -1.81 | -- | -- | 0.136 | 7.19 | 75.68 | 942 | -- | -- |
| 970.28 | 1.45 | 9.99 | -1.29 | -- | -1.15 | -- | 2.36 | 0.485 | -- | 54 | 2738 | -- | -- |
| 243.01 | 0.731 | 9.9 | -0.941 | 3.76 | -- | 2.45 | -- | 0.257 | 6.75 | -- | -- | -- | -- |
| 258.02 | 0.752 | 9.9 | -0.903 | 3.77 | -- | -- | -- | 0.249 | 6.69 | -- | -- | -- | -- |
| 966.34 | 1.45 | 9.92 | -1.05 | -- | -1.23 | -- | -- | 0.572 | -- | 55.75 | 2735 | -- | -- |
| 228.78 | 0.704 | 9.87 | -- | 4.33 | -1.75 | -- | -- | 0.295 | 7.17 | 76.83 | 909 | -- | -- |
| 999.22 | 1.48 | 9.98 | -0.815 | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
| 279.5 | 0.782 | 9.88 | -- | 3.76 | -- | -- | -- | 0.35 | 6.7 | -- | -- | -- | -- |
| 954.39 | 1.44 | 9.97 | -- | -- | -2.16 | -- | -- | 0.27 | -- | 78 | 2792 | -- | -- |
| 1016.75 | 1.49 | 9.96 | -- | -- | -- | -- | -- | 0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.39 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 11 |
| 3 | 172.25 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 6 | 172.93 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 22 | 174.32 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 28 | 174.79 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 12 |
| 31 | 174.97 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 14 |
| 50 | 175.97 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 56 | 176.11 | humidity | 80 | 720 | < th | dose independent | sin | 19 | NA |
| 59 | 176.16 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 116 | 177.80 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 127 | 178.08 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 164 | 178.87 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 187 | 179.33 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 271 | 181.04 | humidity | 80 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 321 | 181.85 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 18 |
| 324 | 181.89 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 22 |
| 327 | 181.94 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 16 |
| 425 | 183.37 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 21 |
| 478 | 183.88 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 574 | 184.80 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 587 | 184.89 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 3 |
| 646 | 185.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 650 | 185.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 742 | 186.35 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 23 |
| 750 | 186.42 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 851 | 187.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 880 | 187.47 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 901 | 187.59 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 929 | 187.75 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 945 | 187.88 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 993 | 188.18 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 23 |