BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0660000 Os11g0660000|AK066709
(523 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47600.1 | chr2:19524518-19526828 REVERSE LENGTH=540 699 0.0
>AT2G47600.1 | chr2:19524518-19526828 REVERSE LENGTH=540
Length = 539
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/521 (66%), Positives = 411/521 (78%), Gaps = 14/521 (2%)
Query: 13 CDTYLLFNGETLLPIGVRAFIYTAVLAYCFIGLSAITGRFFKSMESIMRHSREVVTVDPH 72
C+ + LF GE L G+R +Y LAYCFIGLSAIT RFFKSME++++HSR+VVT+DP
Sbjct: 23 CENFFLFPGENTLSDGLRGVLYFLGLAYCFIGLSAITARFFKSMENVVKHSRKVVTIDPI 82
Query: 73 TNATIVKHEKVWNYTIADVALLAFGTSFPQISLATIDAIRNLGQLTAGGLGPGTLVGSAA 132
T A ++ ++KVWN+TIAD++LLAFGTSFPQISLATIDAIRN+G+ AGGLGPGTLVGSAA
Sbjct: 83 TKAEVITYKKVWNFTIADISLLAFGTSFPQISLATIDAIRNMGERYAGGLGPGTLVGSAA 142
Query: 133 FDLFPIHAVCVVMPRAGSKKKISDLGVWLVELFWSFWAYIWLYIILEVWTPRVITLWEAX 192
FDLFPIHAVCVV+P+AG KKISDLGVWLVEL WSFWAYIWLYIILEVW+P VITL EA
Sbjct: 143 FDLFPIHAVCVVVPKAGELKKISDLGVWLVELVWSFWAYIWLYIILEVWSPNVITLVEAL 202
Query: 193 XXXXXXXXXXXHAYAQDKRWPYVSIPLARGERPEDWVPAE-DASVXXXXXXXXXXXXLPG 251
HAYAQDKRWPY+S+P++RG+RPE+WVP E D S
Sbjct: 203 LTVLQYGLLLVHAYAQDKRWPYLSLPMSRGDRPEEWVPEEIDTSKDDNDNDVHDVYSDAA 262
Query: 252 QN------EDIVDIFSAHSYSNEG---YHHXXXXXXXXXXTGLTLKNKWEDTHWFSIWWQ 302
Q+ +IVDIFS HS +N+ YH T K K +++ F IW
Sbjct: 263 QDAVESGSRNIVDIFSIHSANNDTGITYH----TVADTPPDSATKKGKAKNSTVFDIWKH 318
Query: 303 QFVDAATLESSVSRKMDSTCLRVIGISWNLIIAPWKMLFAFVPPYEIAHGWIAFICSLIF 362
QFVDA TLE+S S+K+DS LR+ W+L++APWK+LFAFVPP IAHGWIAFICSL+F
Sbjct: 319 QFVDAITLETSESKKVDSIYLRIAKSFWHLLLAPWKLLFAFVPPCNIAHGWIAFICSLLF 378
Query: 363 ISGIAYGVTKITDQISCVTGVSPYVIAFTALAAGTSWPDLVASKIAAERQITADSAITNI 422
ISG+A+ VT+ TD ISCVTG++PYVIAFTALA+GTSWPDLVASKIAAERQ+TADSAI NI
Sbjct: 379 ISGVAFVVTRFTDLISCVTGINPYVIAFTALASGTSWPDLVASKIAAERQLTADSAIANI 438
Query: 423 TCSNSVNIYVGIGVPWLVDTMYNYFVYQKPLYIDNAAGLSFSLLVFFATSFGCITVLVLR 482
TCSNSVNIYVGIGVPWL++T+YNYF Y++PLYI+NA GLSFSLL+FFATS GCI VLVLR
Sbjct: 439 TCSNSVNIYVGIGVPWLINTVYNYFAYREPLYIENAKGLSFSLLIFFATSVGCIVVLVLR 498
Query: 483 RVILGAELGGPRMWAWATSVYFMILWVVFVVLSSLKISGVI 523
R+I+GAELGGPR+WAW TS YFM+LWVVFVVLSSLK+SGVI
Sbjct: 499 RLIIGAELGGPRLWAWLTSAYFMMLWVVFVVLSSLKVSGVI 539
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,516,676
Number of extensions: 394834
Number of successful extensions: 1038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 420
Effective length of database: 8,282,721
Effective search space: 3478742820
Effective search space used: 3478742820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)