BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0634800 Os11g0634800|J065093M12
         (60 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0634800  Similar to Adenylyl-sulfate kinase 1, chloropl...   124   1e-29
Os07g0573100  Similar to Adenylyl-sulfate kinase 1, chloropl...    74   3e-14

>Os11g0634800 Similar to Adenylyl-sulfate kinase 1, chloroplast precursor (EC
          2.7.1.25) (APS kinase) (Adenosine-5\'phosphosulfate
          kinase) (ATP adenosine-5\'- phosphosulfate
          3\'-phosphotransferase)
          Length = 60

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MLMSGFVGEVAKLFADAGLICITSLISPYKSDRSACRKLLPNSSFIEVYLLQNSNCHVNK 60
          MLMSGFVGEVAKLFADAGLICITSLISPYKSDRSACRKLLPNSSFIEVYLLQNSNCHVNK
Sbjct: 1  MLMSGFVGEVAKLFADAGLICITSLISPYKSDRSACRKLLPNSSFIEVYLLQNSNCHVNK 60



>Os07g0573100 Similar to Adenylyl-sulfate kinase 1, chloroplast precursor (EC
           2.7.1.25) (APS kinase) (Adenosine-5\'phosphosulfate
           kinase) (ATP adenosine-5\'- phosphosulfate
           3\'-phosphotransferase)
          Length = 345

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query: 7   VGEVAKLFADAGLICITSLISPYKSDRSACRKLLPNSSFIEVYL 50
           VGEVAKLFADAGL+CI S ISPY+ DR +CR LL + SFIEV+L
Sbjct: 229 VGEVAKLFADAGLVCIASFISPYRRDRESCRALLSDGSFIEVFL 272



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,734,181
Number of extensions: 46899
Number of successful extensions: 111
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 17,035,801
Length adjustment: 32
Effective length of query: 28
Effective length of database: 15,364,953
Effective search space: 430218684
Effective search space used: 430218684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)