FiT-DB / Search/ Help/ Sample detail
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Os11g0634800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenylyl-sulfate kinase 1, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 481.53 | 1.03 | 5.23 | -3.74 | 0.819 | 1.77 | -0.163 | -21.5 | 0.26 | 5.77 | 25.39 | 4216 | -- | -- |
| 603.81 | 1.14 | 4.5 | 2.28 | 0.765 | -1.08 | -0.369 | -- | 1.74 | 5.66 | -69.21 | 47520 | -- | -- |
| 477.77 | 1.02 | 5.18 | -3.5 | 0.859 | 1.86 | -- | -21.8 | 0.435 | 5.59 | 26.2 | 4222 | -- | -- |
| 519.28 | 1.06 | 4.39 | 1.86 | 0.486 | -1.54 | -- | -- | 1.67 | 3.98 | 34.95 | 19526 | -- | -- |
| 512.02 | 1.05 | 5.25 | -3.85 | -- | 2.26 | -- | -23.6 | 0.418 | -- | 26.5 | 4233 | -- | -- |
| 615.45 | 1.16 | 4.6 | 1.16 | 0.753 | -- | -0.44 | -- | 1.3 | 5.79 | -- | -- | -- | -- |
| 615.86 | 1.16 | 4.6 | 1.16 | 0.75 | -- | -- | -- | 1.3 | 5.62 | -- | -- | -- | -- |
| 518.66 | 1.06 | 4.48 | 2.29 | -- | -1.99 | -- | -- | 1.94 | -- | 33.36 | 23816 | -- | -- |
| 583.83 | 1.13 | 4.59 | -- | 0.776 | -1.66 | -- | -- | 1.47 | 3.81 | 35 | 16423 | -- | -- |
| 645.1 | 1.19 | 4.61 | 1.18 | -- | -- | -- | -- | 1.32 | -- | -- | -- | -- | -- |
| 651.03 | 1.19 | 4.63 | -- | 0.769 | -- | -- | -- | 1.17 | 5.55 | -- | -- | -- | -- |
| 605.54 | 1.15 | 4.62 | -- | -- | -1.76 | -- | -- | 1.31 | -- | 35.36 | 15149 | -- | -- |
| 681.79 | 1.22 | 4.64 | -- | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 433.18 | humidity | 90 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 3 | 433.53 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 4 | 435.13 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 9 | 439.04 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 13 | 440.47 | wind | 3 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 18 | 441.45 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 19 | 441.51 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 21 | 442.23 | humidity | 50 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 23 | 442.51 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 37 | 443.77 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 38 | 443.86 | wind | 7 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 44 | 444.44 | wind | 9 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 103 | 448.86 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 104 | 448.92 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 115 | 449.28 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 117 | 449.33 | radiation | 20 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 120 | 449.35 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 121 | 449.37 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 126 | 449.40 | humidity | 80 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 161 | 450.41 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 178 | 450.85 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 186 | 451.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 199 | 451.45 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 200 | 451.51 | humidity | 80 | 43200 | < th | dose dependent | sin | 4 | NA |
| 228 | 452.16 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 324 | 453.68 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 345 | 454.11 | humidity | 70 | 43200 | < th | dose independent | sin | 4 | NA |
| 354 | 454.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 407 | 454.87 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 465 | 455.58 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 502 | 456.01 | humidity | 70 | 43200 | > th | dose independent | sin | 9 | NA |
| 544 | 456.41 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 548 | 456.46 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 550 | 456.48 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 597 | 456.82 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 612 | 456.92 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 19 |
| 655 | 457.16 | humidity | 70 | 43200 | > th | dose independent | sin | 3 | NA |
| 853 | 458.27 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 13 |
| 879 | 458.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 895 | 458.41 | humidity | 60 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 897 | 458.41 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 905 | 458.44 | temperature | 25 | 43200 | > th | dose independent | sin | 3 | NA |
| 909 | 458.45 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 949 | 458.57 | humidity | 80 | 43200 | < th | dose dependent | no | NA | NA |
| 995 | 458.76 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
