FiT-DB / Search/ Help/ Sample detail
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Os07g0573100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenylyl-sulfate kinase 1, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.85 | 0.215 | 10.7 | 0.17 | 0.601 | 0.253 | 0.0422 | 0.858 | -0.0377 | 5.44 | 1002 | 10623 | -- | -- |
| 21.15 | 0.214 | 10.7 | 0.12 | 0.604 | 0.379 | 0.0448 | -- | -0.0182 | 5.43 | 1002 | 11908 | -- | -- |
| 20.85 | 0.213 | 10.7 | 0.172 | 0.602 | 0.253 | -- | 0.867 | -0.0371 | 5.45 | 1002 | 10665 | -- | -- |
| 21.15 | 0.214 | 10.7 | 0.121 | 0.604 | 0.379 | -- | -- | -0.0174 | 5.43 | 1002 | 11930 | -- | -- |
| 39.6 | 0.293 | 10.7 | 0.232 | -- | 0.209 | -- | 1.03 | -0.0147 | -- | 1003 | 10411 | -- | -- |
| 24.41 | 0.232 | 10.7 | 0.18 | 0.597 | -- | 0.0259 | -- | -0.0748 | 5.46 | -- | -- | -- | -- |
| 24.41 | 0.231 | 10.7 | 0.18 | 0.597 | -- | -- | -- | -0.075 | 5.46 | -- | -- | -- | -- |
| 40.02 | 0.295 | 10.7 | 0.147 | -- | 0.369 | -- | -- | -0.00743 | -- | 1002 | 11269 | -- | -- |
| 21.52 | 0.216 | 10.7 | -- | 0.606 | 0.391 | -- | -- | -0.0298 | 5.43 | 1002 | 12408 | -- | -- |
| 42.95 | 0.306 | 10.7 | 0.2 | -- | -- | -- | -- | -0.0603 | -- | -- | -- | -- | -- |
| 25.26 | 0.235 | 10.7 | -- | 0.6 | -- | -- | -- | -0.095 | 5.45 | -- | -- | -- | -- |
| 40.32 | 0.296 | 10.7 | -- | -- | 0.394 | -- | -- | -0.0353 | -- | 999.6 | 11417 | -- | -- |
| 44 | 0.31 | 10.7 | -- | -- | -- | -- | -- | -0.0825 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 19.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 19.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 4 | 19.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 19.91 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 7 | 20.05 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 20 | 20.18 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 22 | 20.19 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 39 | 20.27 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 42 | 20.30 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 46 | 20.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 47 | 20.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 51 | 20.36 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 59 | 20.36 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 60 | 20.36 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 68 | 20.37 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 110 | 20.39 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 113 | 20.39 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 133 | 20.41 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 149 | 20.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 154 | 20.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 223 | 20.49 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 286 | 20.63 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 300 | 20.71 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 338 | 20.80 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 340 | 20.81 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 393 | 20.95 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 395 | 20.96 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 398 | 20.96 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 408 | 20.97 | wind | 9.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 413 | 20.98 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 421 | 20.98 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 437 | 21.01 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 592 | 21.16 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 619 | 21.17 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 970 | 21.28 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 971 | 21.28 | atmosphere | 1000.0 | 4320 | < th | dose independent | sin | 0 | NA |
| 973 | 21.28 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
