BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0573100 Os07g0573100|AK071285
(345 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03900.1 | chr3:1002975-1004271 REVERSE LENGTH=209 343 8e-95
AT2G14750.1 | chr2:6314128-6315501 FORWARD LENGTH=277 307 6e-84
AT4G39940.1 | chr4:18519787-18521276 FORWARD LENGTH=294 301 4e-82
AT5G67520.1 | chr5:26939342-26940842 FORWARD LENGTH=311 290 1e-78
>AT3G03900.1 | chr3:1002975-1004271 REVERSE LENGTH=209
Length = 208
Score = 343 bits (880), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 157/206 (76%), Positives = 183/206 (88%)
Query: 140 SIVPKASNIFWHDCAVGQADRQKLLKQKGCVVWITGLSGSGKSTLACTLDRELHTRGKLS 199
S V ++NIFW + +G+ +RQKLL QKGCVVWITGLSGSGKSTLAC+L REL+ RGKLS
Sbjct: 2 STVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKLS 61
Query: 200 YVLDGDNLRHGLNKDLGFKAEDRAENIRRVGEVAKLFADAGLVCIASFISPYRRDRESCR 259
Y+LDGDNLRHGLNKDLGFKAEDR ENIRRVGEVAKLFADAGL+CIAS ISPYR+DR++CR
Sbjct: 62 YILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR 121
Query: 260 ALLSDGSFIEVFLNMPLELCESRDPKGLYKLARAGKIKGFTGIDDPYESPLNSEIEIKEV 319
++ + SFIEVF+NM L+LCE+RDPKGLYKLARAGKIKGFTGIDDPYESPLN EIE+KE
Sbjct: 122 EMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFTGIDDPYESPLNCEIELKEK 181
Query: 320 DGVCPSPSDMAGQVVTYLEEKGFLHD 345
+G CPSP MA +V++YLE+KGFL +
Sbjct: 182 EGECPSPVAMAEEVISYLEDKGFLQN 207
>AT2G14750.1 | chr2:6314128-6315501 FORWARD LENGTH=277
Length = 276
Score = 307 bits (786), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 141/205 (68%), Positives = 173/205 (84%), Gaps = 2/205 (0%)
Query: 140 SIVPKASNIFWHDCAVGQADRQKLLKQKGCVVWITGLSGSGKSTLACTLDRELHTRGKLS 199
S V ++NI WH+C+V + DRQ+LL QKGCV+W+TGLSGSGKSTLAC L++ L+ +GKL
Sbjct: 73 STVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 132
Query: 200 YVLDGDNLRHGLNKDLGFKAEDRAENIRRVGEVAKLFADAGLVCIASFISPYRRDRESCR 259
Y+LDGDN+RHGLN+DL FKAEDRAENIRRVGEVAKLFADAG++CIAS ISPYR DR++CR
Sbjct: 133 YILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACR 192
Query: 260 ALLSDGSFIEVFLNMPLELCESRDPKGLYKLARAGKIKGFTGIDDPYESPLNSEIEIKEV 319
+LL +G F+EVF+++PL +CE+RDPKGLYKLARAGKIKGFTGIDDPYE PLN EI +
Sbjct: 193 SLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGRE 252
Query: 320 DGVCPSPSDMAGQVVTYLEEKGFLH 344
G SP +MA +VV YL+ KG+L
Sbjct: 253 GGT--SPIEMAEKVVGYLDNKGYLQ 275
>AT4G39940.1 | chr4:18519787-18521276 FORWARD LENGTH=294
Length = 293
Score = 301 bits (771), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 138/202 (68%), Positives = 169/202 (83%), Gaps = 3/202 (1%)
Query: 144 KASNIFWHDCAVGQADRQKLLKQKGCVVWITGLSGSGKSTLACTLDRELHTRGKLSYVLD 203
KA NI WH+ ++ + DRQ+LL+QKGCVVWITGLSGSGKST+AC L + L RGKL+Y LD
Sbjct: 91 KAENIVWHESSICRCDRQQLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLD 150
Query: 204 GDNLRHGLNKDLGFKAEDRAENIRRVGEVAKLFADAGLVCIASFISPYRRDRESCRALLS 263
GDN+RHGLN+DL FKAE R ENIRR+GEVAKLFAD G++CIAS ISPYRRDR++CR+LL
Sbjct: 151 GDNVRHGLNRDLTFKAEHRTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLP 210
Query: 264 DGSFIEVFLNMPLELCESRDPKGLYKLARAGKIKGFTGIDDPYESPLNSEIEIKEV--DG 321
DG F+EVF+++PL +CESRDPKGLYKLARAGKIKGFTGIDDPYE+P+N E+ +K D
Sbjct: 211 DGDFVEVFMDVPLHVCESRDPKGLYKLARAGKIKGFTGIDDPYEAPVNCEVVLKHTGDDE 270
Query: 322 VCPSPSDMAGQVVTYLEEKGFL 343
C SP MA +++YL+ KG+L
Sbjct: 271 SC-SPRQMAENIISYLQNKGYL 291
>AT5G67520.1 | chr5:26939342-26940842 FORWARD LENGTH=311
Length = 310
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/222 (62%), Positives = 169/222 (76%), Gaps = 15/222 (6%)
Query: 137 QMSSIVPKASNIFWHDCAVGQADRQKLLKQKGCVVWITGLSGSGKSTLACTLDRELHTRG 196
+ I K NI WHDC V ++DRQ+L+KQKGCV+WITGLSGSGKS+LAC L R LH RG
Sbjct: 78 ETKQINGKQKNIVWHDCPVTKSDRQELIKQKGCVIWITGLSGSGKSSLACALSRALHNRG 137
Query: 197 KLSYVLDGDNLRHGLNKDLGFKAEDRAENIRRVGEVAKLFADAGLVCIASFISPYRRDRE 256
KLSY+LDGDN+RHGLN DL F+A+DRAENIRRVGEVAKLFAD+G++CIAS ISPYR +R
Sbjct: 138 KLSYILDGDNVRHGLNSDLSFEADDRAENIRRVGEVAKLFADSGIICIASLISPYRIERA 197
Query: 257 SCRALLSDGSFIEVFLNMPLELCESRDPKGLYKLARAGKIKGFTGIDDPYESPLNSEIEI 316
+CRALL G FIEVF+++PL +CE+RDPKGLYK ARAGKIKGFTG+DDPYE+PL+ EI I
Sbjct: 198 ACRALLPQGDFIEVFMDVPLHVCEARDPKGLYKRARAGKIKGFTGVDDPYEAPLDCEIVI 257
Query: 317 KE---------------VDGVCPSPSDMAGQVVTYLEEKGFL 343
+ S +MA VV+YL++ G+L
Sbjct: 258 QNSRDKGLSSSSSSSSSPSSSSSSLCEMADIVVSYLDQNGYL 299
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,431,207
Number of extensions: 226311
Number of successful extensions: 681
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)