BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0614900 Os11g0614900|AK072924
         (277 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0614900  Protein of unknown function DUF829, eukaryotic...   473   e-134
Os06g0213400  Protein of unknown function DUF829, eukaryotic...   226   2e-59

>Os11g0614900 Protein of unknown function DUF829, eukaryotic family protein
          Length = 277

 Score =  473 bits (1218), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/277 (85%), Positives = 238/277 (85%)

Query: 1   PNKHQHTHLLPLFVFPQFXXXXXXXXXXXXXVLDCSXXXXXXXXXXXXXXXXXXXXXXXX 60
           PNKHQHTHLLPLFVFPQF             VLDCS                        
Sbjct: 1   PNKHQHTHLLPLFVFPQFKKRRRERGGGGEKVLDCSGGGGMWGRQYWGGGRRPSGGGGGV 60

Query: 61  XXMFAWLSSQERQVRAYVELYAALGWACLVCHSEFLTLFFPDKAAMLADRVLAELVKELK 120
             MFAWLSSQERQVRAYVELYAALGWACLVCHSEFLTLFFPDKAAMLADRVLAELVKELK
Sbjct: 61  VVMFAWLSSQERQVRAYVELYAALGWACLVCHSEFLTLFFPDKAAMLADRVLAELVKELK 120

Query: 121 VRPVPVVFASFSGGPKGCTYKVLQLIERRCEGQLSLEEYQLVRDCLCGQMYDSSPVDFVS 180
           VRPVPVVFASFSGGPKGCTYKVLQLIERRCEGQLSLEEYQLVRDCLCGQMYDSSPVDFVS
Sbjct: 121 VRPVPVVFASFSGGPKGCTYKVLQLIERRCEGQLSLEEYQLVRDCLCGQMYDSSPVDFVS 180

Query: 181 DLGTRFLLHPSVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVVCHS 240
           DLGTRFLLHPSVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVVCHS
Sbjct: 181 DLGTRFLLHPSVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVVCHS 240

Query: 241 VLSVTCNLIVNGSVCGYLSKHWSIVLSACWSNTHILF 277
           VLSVTCNLIVNGSVCGYLSKHWSIVLSACWSNTHILF
Sbjct: 241 VLSVTCNLIVNGSVCGYLSKHWSIVLSACWSNTHILF 277



>Os06g0213400 Protein of unknown function DUF829, eukaryotic family protein
          Length = 405

 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 143/195 (73%), Gaps = 3/195 (1%)

Query: 69  SQERQVRAYVELYAALGWACLVCHSEFLTLFFPDKAAMLADRVLAELVKELKVRPVPVVF 128
           S E Q+R +VELYA+LGW CLVCH + + L+  +KAA LA  V++ELVKE KV+P+P VF
Sbjct: 35  SDEAQLRPFVELYASLGWRCLVCHPDLVALYLSEKAASLASGVISELVKEFKVKPLPTVF 94

Query: 129 ASFSGGPKGCTYKVLQLIERRCEGQLSLEEYQLVRDCLCGQMYDSSPVDFVSDLGTRFLL 188
           ASFSGG KGC YKV+QL++  CEG  ++++Y+LVR+C+CGQ+YDS PVDF SD+GT+FL 
Sbjct: 95  ASFSGGSKGCMYKVIQLLDGNCEGDATMKDYRLVRNCICGQIYDSGPVDFFSDVGTQFLQ 154

Query: 189 HPSVLKMSQPPRILSWMTRGIASGLDTLFIGKFEAQRAEYWDTLYSSVVCHSVL---SVT 245
           +P +   S+P  +LSWMT+ +ASG+DTLF  + EAQRAEYW TLYSS     VL   S  
Sbjct: 155 NPMIGNSSRPSMLLSWMTKALASGMDTLFPSRIEAQRAEYWHTLYSSAGLGPVLMLCSED 214

Query: 246 CNLIVNGSVCGYLSK 260
            +L     VCG+  +
Sbjct: 215 DDLAPCHVVCGFARR 229



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,078,623
Number of extensions: 285099
Number of successful extensions: 700
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)