Os11g0614900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF829, eukaryotic family protein.
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Os11g0614900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF829, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.94 | 0.358 | 11 | -0.982 | 0.629 | -0.81 | -0.257 | 0.208 | -0.0729 | 1.54 | 22.06 | 717 | -- | -- |
| 58 | 0.355 | 10.9 | -0.962 | 0.629 | -0.822 | -0.26 | -- | -0.0707 | 1.53 | 22.1 | 719 | -- | -- |
| 58.18 | 0.355 | 11 | -0.986 | 0.63 | -0.787 | -- | 0.33 | -0.0739 | 1.52 | 22.08 | 726 | -- | -- |
| 58.31 | 0.356 | 10.9 | -0.956 | 0.627 | -0.861 | -- | -- | -0.0698 | 1.53 | 22.02 | 733 | -- | -- |
| 81.48 | 0.42 | 11 | -0.927 | -- | -0.771 | -- | 0.223 | -0.0841 | -- | 25.49 | 876 | -- | -- |
| 65.76 | 0.38 | 10.9 | -0.752 | 0.684 | -- | -0.341 | -- | 0.0427 | 1.22 | -- | -- | -- | -- |
| 66.23 | 0.381 | 10.9 | -0.74 | 0.684 | -- | -- | -- | 0.0446 | 1.2 | -- | -- | -- | -- |
| 80.6 | 0.418 | 11 | -1.01 | -- | -1.1 | -- | -- | -0.103 | -- | 22.5 | 885 | -- | -- |
| 79.05 | 0.414 | 10.9 | -- | 0.656 | -0.336 | -- | -- | 0.0866 | 1.31 | 22.7 | 606 | -- | -- |
| 95.22 | 0.456 | 10.9 | -0.714 | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
| 80.67 | 0.42 | 10.9 | -- | 0.672 | -- | -- | -- | 0.127 | 1.16 | -- | -- | -- | -- |
| 103.63 | 0.474 | 10.9 | -- | -- | -0.576 | -- | -- | 0.0616 | -- | 23.05 | 851 | -- | -- |
| 108.66 | 0.487 | 10.9 | -- | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 6 | 55.35 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 17 |
| 7 | 55.37 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 9 | 55.73 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 14 | 56.01 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 4 |
| 32 | 56.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 35 | 56.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 48 | 56.91 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 54 | 57.05 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 56 | 57.07 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 62 | 57.09 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 69 | 57.15 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 77 | 57.19 | temperature | 20 | 720 | < th | dose dependent | sin | 7 | NA |
| 104 | 57.32 | temperature | 15 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 105 | 57.32 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 114 | 57.35 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 125 | 57.40 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 132 | 57.42 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 144 | 57.45 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 177 | 57.53 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 183 | 57.54 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 13 |
| 195 | 57.57 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 198 | 57.57 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 209 | 57.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 278 | 57.70 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 294 | 57.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 325 | 57.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 13 |
| 345 | 57.82 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 357 | 57.84 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 365 | 57.85 | temperature | 20 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 370 | 57.86 | wind | 9 | 14400 | > th | dose dependent | sin | 5 | NA |
| 375 | 57.87 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 381 | 57.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 387 | 57.89 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 393 | 57.90 | temperature | 15 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 395 | 57.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 405 | 57.92 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 439 | 57.98 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 445 | 57.99 | wind | 9 | 14400 | > th | dose independent | sin | 5 | NA |
| 469 | 58.02 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 504 | 58.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 552 | 58.10 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 587 | 58.16 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 609 | 58.18 | wind | 9 | 14400 | < th | dose independent | sin | 5 | NA |
| 611 | 58.18 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 632 | 58.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 656 | 58.22 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 7 | 17 |
| 672 | 58.25 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 676 | 58.25 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 718 | 58.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 769 | 58.35 | wind | 9 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 785 | 58.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 811 | 58.38 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 20 |
| 876 | 58.44 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 889 | 58.45 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 927 | 58.49 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 940 | 58.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 953 | 58.50 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 954 | 58.50 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 969 | 58.52 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 2 |
| 973 | 58.52 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 991 | 58.53 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |