FiT-DB / Search/ Help/ Sample detail

Os06g0213400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF829, eukaryotic family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0146) R2 : 0.684
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.19 (0.038) R2dC : 0.686 R2C : 0.679
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0707 (0.0306) R2dN8 : 0.00478 R2N8 : -0.00216
σ : 0.274
deviance : 34.39
__
_____
C
peak time of C : 6.63
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.33 0.236 12.5 -0.399 1.2 0.284 -0.857 -0.341 -0.115 5.69 10.07 10 -- --
25.69 0.236 12.5 -0.421 1.22 0.333 -0.826 -- -0.123 5.67 15.43 10 -- --
27.13 0.243 12.5 -0.401 1.2 0.284 -- -0.318 -0.111 5.7 10.07 10 -- --
27.21 0.243 12.5 -0.39 1.21 0.295 -- -- -0.107 5.78 16.03 9 -- --
96.95 0.461 12.5 -0.338 -- 0.254 -- -0.341 -0.0938 -- 4.85 8 -- --
28.5 0.25 12.5 -0.373 1.2 -- -0.882 -- -0.116 6.6 -- -- -- --
30.45 0.258 12.5 -0.386 1.2 -- -- -- -0.114 6.61 -- -- -- --
97.74 0.462 12.5 -0.345 -- 0.254 -- -- -0.095 -- 4.827 6 -- --
31.57 0.262 12.5 -- 1.18 0.281 -- -- -0.0773 5.8 16.12 9 -- --
105.09 0.479 12.5 -0.358 -- -- -- -- -0.0895 -- -- -- -- --
34.39 0.274 12.5 -- 1.19 -- -- -- -0.0707 6.63 -- -- -- --
100.88 0.469 12.5 -- -- 0.259 -- -- -0.0568 -- 4.82 6 -- --
108.47 0.486 12.5 -- -- -- -- -- -0.0498 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.05 wind 7.0 90 < th dose independent rect. 19 10
2 23.14 temperature 15.0 90 > th dose independent rect. 19 10
3 23.27 atmosphere 1000.0 270 > th dose independent rect. 22 10
4 23.33 radiation 20.0 10 < th dose dependent rect. 6 12
7 23.40 temperature 30.0 90 < th dose independent rect. 19 10
8 23.40 humidity 50.0 90 > th dose independent rect. 19 10
10 23.40 atmosphere 995.0 90 > th dose independent rect. 19 10
11 23.40 radiation 20.0 90 < th dose independent rect. 19 10
14 23.40 precipitation 0.1 90 < th dose independent rect. 19 10
15 23.40 temperature 10.0 90 > th dose independent rect. 5 14
16 23.40 atmosphere 1015.0 90 < th dose independent rect. 5 14
17 23.40 precipitation 0.1 90 < th dose dependent rect. 19 10
18 23.41 radiation 20.0 90 < th dose dependent rect. 19 10
21 23.42 radiation 1.0 90 < th dose independent rect. 19 10
25 23.43 radiation 30.0 90 < th dose dependent rect. 5 13
30 23.54 temperature 15.0 270 > th dose independent rect. 8 14
34 23.63 wind 1.0 90 > th dose independent rect. 5 14
36 23.66 wind 9.0 90 < th dose independent rect. 5 14
37 23.68 temperature 10.0 270 > th dose independent rect. 17 10
38 23.68 radiation 20.0 270 < th dose independent rect. 17 10
41 23.68 temperature 10.0 270 > th dose independent rect. 3 14
42 23.68 atmosphere 1015.0 270 < th dose independent rect. 3 14
44 23.70 precipitation 0.1 90 < th dose independent rect. 5 14
47 23.70 precipitation 0.1 90 < th dose dependent rect. 5 14
48 23.72 radiation 1.0 270 > th dose independent rect. 7 6
49 23.72 precipitation 0.1 270 < th dose independent rect. 17 10
50 23.72 precipitation 0.1 270 < th dose dependent rect. 17 10
51 23.72 humidity 50.0 270 > th dose dependent rect. 21 11
52 23.73 atmosphere 995.0 270 > th dose independent rect. 17 10
53 23.74 atmosphere 1000.0 90 > th dose independent rect. 14 19
54 23.74 radiation 20.0 90 < th dose dependent rect. 5 5
55 23.74 radiation 40.0 270 < th dose dependent rect. 17 10
64 23.79 radiation 10.0 30 > th dose independent rect. 9 5
67 23.80 temperature 15.0 270 > th dose independent rect. 18 19
70 23.81 atmosphere 1000.0 10 > th dose independent rect. 14 19
75 23.83 radiation 10.0 10 < th dose independent rect. 6 12
77 23.84 temperature 15.0 270 > th dose independent rect. 7 6
89 23.89 wind 1.0 270 > th dose independent rect. 17 10
95 23.90 humidity 80.0 10 < th dose independent rect. 9 5
106 23.97 humidity 90.0 90 < th dose independent rect. 9 5
109 23.97 atmosphere 995.0 90 > th dose independent rect. 5 14
110 23.97 wind 1.0 10 > th dose independent rect. 5 15
116 23.98 humidity 70.0 270 > th dose independent rect. 22 10
120 23.99 radiation 20.0 90 < th dose independent rect. 5 13
122 24.00 temperature 15.0 90 > th dose independent rect. 9 5
135 24.01 wind 9.0 270 < th dose independent rect. 3 14
138 24.02 atmosphere 1000.0 90 > th dose independent rect. 5 4
160 24.04 radiation 30.0 270 < th dose independent rect. 22 10
161 24.04 wind 9.0 270 < th dose independent rect. 8 14
164 24.06 temperature 10.0 1440 > th dose independent rect. 19 11
167 24.06 temperature 30.0 1440 < th dose independent rect. 19 11
171 24.06 humidity 50.0 1440 > th dose independent rect. 19 11
173 24.06 atmosphere 995.0 1440 > th dose independent rect. 19 11
174 24.06 radiation 20.0 1440 < th dose independent rect. 19 11
185 24.06 temperature 10.0 1440 > th dose independent rect. 6 13
193 24.08 precipitation 0.1 270 < th dose independent rect. 7 6
196 24.08 radiation 40.0 90 < th dose independent rect. 14 19
197 24.08 precipitation 0.1 270 < th dose dependent rect. 7 6
198 24.09 wind 1.0 270 > th dose independent rect. 7 6
204 24.11 atmosphere 1000.0 270 > th dose independent rect. 5 1
205 24.11 radiation 1.0 270 > th dose independent rect. 9 2
211 24.12 atmosphere 995.0 270 > th dose independent rect. 7 6
212 24.12 atmosphere 1015.0 270 < th dose independent rect. 7 6
215 24.12 precipitation 0.1 270 < th dose independent rect. 3 14
216 24.12 temperature 10.0 270 > th dose independent rect. 13 18
218 24.12 precipitation 0.1 270 < th dose dependent rect. 3 14
219 24.13 temperature 15.0 270 > th dose independent rect. 9 2
220 24.13 wind 9.0 270 < th dose independent rect. 7 6
222 24.13 temperature 10.0 1440 > th dose independent rect. 21 9
225 24.13 temperature 30.0 1440 < th dose independent rect. 21 9
229 24.13 humidity 50.0 1440 > th dose independent rect. 21 9
235 24.13 atmosphere 995.0 1440 > th dose independent rect. 21 9
236 24.13 radiation 20.0 1440 < th dose independent rect. 21 9
247 24.13 temperature 10.0 1440 > th dose independent rect. 6 15
259 24.17 radiation 20.0 90 < th dose independent rect. 5 4
264 24.17 humidity 50.0 270 > th dose independent rect. 13 18
268 24.18 precipitation 0.1 90 < th dose independent rect. 9 5
269 24.18 humidity 50.0 270 > th dose independent rect. 7 6
271 24.18 precipitation 0.1 270 < th dose independent rect. 8 14
273 24.18 precipitation 0.1 90 < th dose dependent rect. 9 5
274 24.18 precipitation 0.1 270 < th dose dependent rect. 8 14
279 24.19 radiation 40.0 90 < th dose independent rect. 5 14
280 24.19 radiation 10.0 270 < th dose dependent rect. 5 1
284 24.20 atmosphere 995.0 270 > th dose independent rect. 3 14
286 24.20 humidity 60.0 90 > th dose dependent rect. 5 4
289 24.21 temperature 10.0 270 > th dose independent rect. 22 10
290 24.21 temperature 30.0 270 < th dose independent rect. 22 10
291 24.21 humidity 50.0 270 > th dose independent rect. 22 10
296 24.21 wind 1.0 270 > th dose independent rect. 13 18
297 24.21 temperature 15.0 10 > th dose independent rect. 20 18
298 24.21 radiation 20.0 30 < th dose independent rect. 14 20
300 24.21 radiation 40.0 10 < th dose dependent rect. 14 20
302 24.22 atmosphere 995.0 90 > th dose independent rect. 9 5
303 24.22 atmosphere 1015.0 90 < th dose independent rect. 9 5
304 24.22 wind 9.0 270 < th dose independent rect. 22 10
316 24.25 wind 1.0 90 > th dose independent rect. 9 5
319 24.25 temperature 15.0 90 > th dose independent rect. 9 20
329 24.27 wind 9.0 90 < th dose independent rect. 9 5
338 24.27 radiation 40.0 10 < th dose independent rect. 14 19
339 24.27 wind 5.0 90 < th dose independent rect. 9 20
374 24.30 radiation 1.0 90 < th dose dependent sin 12 NA
384 24.31 radiation 20.0 10 < th dose dependent rect. 5 23
385 24.32 precipitation 0.1 270 < th dose independent rect. 9 2
391 24.32 precipitation 0.1 270 < th dose dependent rect. 9 2
393 24.32 wind 1.0 10 > th dose dependent rect. 14 19
395 24.33 radiation 1.0 90 > th dose independent rect. 14 19
408 24.34 wind 9.0 270 < th dose independent rect. 13 18
411 24.35 wind 9.0 270 < th dose independent rect. 9 2
412 24.35 humidity 50.0 270 > th dose independent rect. 9 2
421 24.36 atmosphere 995.0 270 > th dose independent rect. 9 2
422 24.36 atmosphere 1015.0 270 < th dose independent rect. 9 2
429 24.36 precipitation 0.1 270 < th dose independent rect. 13 18
430 24.36 temperature 10.0 270 > th dose independent rect. 11 22
434 24.36 precipitation 0.1 270 < th dose dependent rect. 13 18
435 24.37 wind 1.0 270 > th dose independent rect. 4 2
451 24.39 precipitation 0.1 270 < th dose independent rect. 17 20
452 24.39 precipitation 0.1 270 < th dose dependent rect. 17 20
471 24.41 radiation 20.0 10 < th dose independent rect. 5 23
474 24.42 wind 1.0 270 > th dose independent rect. 9 2
481 24.42 temperature 10.0 90 > th dose dependent rect. 9 5
482 24.42 wind 1.0 10 > th dose dependent rect. 14 6
494 24.43 humidity 50.0 30 > th dose independent rect. 14 19
505 24.44 radiation 40.0 270 < th dose dependent rect. 21 11
515 24.45 wind 1.0 90 > th dose dependent rect. 14 6
516 24.46 temperature 20.0 270 > th dose independent rect. 13 4
517 24.46 temperature 10.0 10 > th dose independent rect. 9 5
519 24.46 atmosphere 995.0 10 > th dose independent rect. 9 5
520 24.46 atmosphere 1015.0 10 < th dose independent rect. 9 5
521 24.46 precipitation 0.1 10 < th dose independent rect. 9 5
526 24.46 temperature 10.0 10 > th dose independent rect. 14 19
527 24.46 temperature 10.0 10 > th dose dependent rect. 9 5
528 24.46 precipitation 0.1 10 < th dose dependent rect. 9 5
537 24.48 radiation 1.0 90 > th dose independent sin 13 NA
545 24.48 wind 1.0 270 > th dose independent rect. 8 14
564 24.50 humidity 80.0 90 > th dose independent rect. 5 4
565 24.50 atmosphere 1000.0 270 > th dose independent rect. 3 4
566 24.50 temperature 10.0 1440 > th dose independent rect. 10 5
573 24.50 temperature 10.0 1440 > th dose independent rect. 15 19
577 24.51 humidity 90.0 270 < th dose independent rect. 9 2
586 24.52 wind 9.0 10 < th dose independent rect. 9 5
615 24.53 wind 9.0 270 < th dose independent rect. 17 20
626 24.54 precipitation 0.1 270 < th dose independent rect. 22 10
629 24.54 precipitation 0.1 270 < th dose dependent rect. 22 10
668 24.56 radiation 20.0 10 < th dose dependent rect. 6 4
680 24.57 atmosphere 1015.0 270 < th dose independent rect. 22 10
685 24.57 atmosphere 1015.0 90 < th dose independent rect. 14 19
688 24.57 radiation 10.0 10 > th dose independent rect. 17 21
704 24.58 atmosphere 1015.0 270 < th dose independent rect. 8 13
706 24.58 atmosphere 995.0 270 > th dose independent rect. 8 14
722 24.59 radiation 10.0 10 > th dose independent sin 0 NA
724 24.59 humidity 90.0 270 < th dose independent rect. 14 3
727 24.59 wind 1.0 270 > th dose independent rect. 13 4
731 24.59 atmosphere 995.0 270 > th dose independent rect. 17 20
734 24.60 radiation 1.0 90 < th dose independent sin 13 NA
736 24.60 temperature 10.0 270 > th dose independent rect. 13 4
738 24.60 atmosphere 1010.0 270 < th dose independent rect. 13 4
744 24.60 humidity 50.0 90 > th dose independent rect. 5 14
751 24.60 wind 9.0 90 < th dose dependent rect. 19 10
754 24.61 radiation 10.0 270 < th dose independent rect. 5 1
786 24.63 humidity 50.0 270 > th dose independent rect. 13 4
787 24.63 precipitation 0.1 270 < th dose independent rect. 13 4
808 24.63 precipitation 0.1 270 < th dose dependent rect. 13 4
818 24.64 humidity 50.0 270 > th dose independent rect. 3 14
847 24.66 humidity 50.0 270 > th dose independent rect. 18 19
848 24.66 wind 5.0 10 < th dose independent rect. 9 20
849 24.66 radiation 20.0 10 < th dose dependent sin 0 NA
906 24.69 radiation 10.0 10 > th dose independent rect. 9 9
932 24.69 temperature 10.0 90 > th dose dependent rect. 19 10
961 24.71 precipitation 0.1 270 < th dose independent rect. 6 23
963 24.71 precipitation 0.1 270 < th dose dependent rect. 6 23
986 24.73 atmosphere 1015.0 10 < th dose independent rect. 14 19
990 24.73 atmosphere 995.0 90 > th dose dependent rect. 5 3
992 24.73 humidity 50.0 90 > th dose dependent rect. 5 13