BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0591600 Os11g0591600|AK058631
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0591600  ThiJ/PfpI domain containing protein                 698   0.0  
Os04g0671700  Peptidase C56, PfpI family protein                  309   2e-84

>Os11g0591600 ThiJ/PfpI domain containing protein
          Length = 396

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/396 (90%), Positives = 359/396 (90%)

Query: 1   MAPCKKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDL 60
           MAPCKKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDL
Sbjct: 1   MAPCKKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDL 60

Query: 61  YTELPGHRFXXXXXXXXXXXXXXXXXXXLVVPGGRFVERLSVDPLAVSLVAAFAGEGETA 120
           YTELPGHRF                   LVVPGGRFVERLSVDPLAVSLVAAFAGEGETA
Sbjct: 61  YTELPGHRFAVTADFAAAAAADASRYDALVVPGGRFVERLSVDPLAVSLVAAFAGEGETA 120

Query: 121 TRRRPVVVTCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWVEPDPLGLCVADGNVL 180
           TRRRPVVVTCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWVEPDPLGLCVADGNVL
Sbjct: 121 TRRRPVVVTCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWVEPDPLGLCVADGNVL 180

Query: 181 SAIGWPAHGEIIREXXXXXXXXXXXXXXXXXXFLCADYVDDYEANVPFRALAGVGCRVEA 240
           SAIGWPAHGEIIRE                  FLCADYVDDYEANVPFRALAGVGCRVEA
Sbjct: 181 SAIGWPAHGEIIRELLRAMGARVAGGRGQAVLFLCADYVDDYEANVPFRALAGVGCRVEA 240

Query: 241 ACPTKRKGEACVTAIYDATPAAASDERRGHNFAVTADWGDVDADRYACVVVPGGRAPELL 300
           ACPTKRKGEACVTAIYDATPAAASDERRGHNFAVTADWGDVDADRYACVVVPGGRAPELL
Sbjct: 241 ACPTKRKGEACVTAIYDATPAAASDERRGHNFAVTADWGDVDADRYACVVVPGGRAPELL 300

Query: 301 ATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVVAGLAGAASVR 360
           ATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVVAGLAGAASVR
Sbjct: 301 ATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVVAGLAGAASVR 360

Query: 361 HGGAVADGKLVTAASWPDLAEFIAHIISLLGITVSF 396
           HGGAVADGKLVTAASWPDLAEFIAHIISLLGITVSF
Sbjct: 361 HGGAVADGKLVTAASWPDLAEFIAHIISLLGITVSF 396



>Os04g0671700 Peptidase C56, PfpI family protein
          Length = 387

 Score =  309 bits (792), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/399 (43%), Positives = 231/399 (57%), Gaps = 15/399 (3%)

Query: 1   MAPCKKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDL 60
           MAP KKVL+LCGDYMEDYEA VPF AL A+GV+VD   PGKK  GD+C TAVH+ +GH  
Sbjct: 1   MAP-KKVLLLCGDYMEDYEAMVPFQALQAYGVSVDAACPGKKA-GDSCRTAVHQGIGHQT 58

Query: 61  YTELPGHRFXXXXXXXXXXXXXXXXXXXLVVPGGRFVERLSVDPLAVSLVAAFAGEGETA 120
           Y E  GH F                   LV+PGGR  E L++D   + LV  F+      
Sbjct: 59  YAESRGHNFALNASFDEVNINEYDG---LVIPGGRAPEYLAMDEKVLDLVRKFS------ 109

Query: 121 TRRRPVVVTCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWVEPDPLGLCVADGNVL 180
             ++P+   CH QL+LAAAG ++  +CTA+ +++ V+  AG  W E D +  C  DGN++
Sbjct: 110 DAKKPIASVCHGQLILAAAGVVQNRKCTAYPAVKPVLVAAGAKWEEADTMDKCTVDGNLV 169

Query: 181 SAIGWPAHGEIIREXXXXXXXXXXXXXXXXXXFLCADYVDDYEANVPFRALAGVGCRVEA 240
           +A+ + AH E I                    FLC DY++DYE  VPF++L  +GC V+A
Sbjct: 170 TAVAYDAHPEFI-SLFVKALGGSVTGSNKRILFLCGDYMEDYEVMVPFQSLQALGCHVDA 228

Query: 241 ACPTKRKGEACVTAIYDATPAAASDERRGHNFAVTADWGDVDADRYACVVVPGGRAPELL 300
            CP K  GE C TAI+D        E+ GH+FA+TA + +VDA  Y  +V+PGGRAPE L
Sbjct: 229 VCPDKGAGEKCPTAIHDFEGDQTYSEKPGHDFALTASFDNVDASSYDALVIPGGRAPEYL 288

Query: 301 ATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVVAGLAGAASVR 360
           A   + ++LV+ F  K K VASI  G  +L+A G+L GR C +  A ++   L GA  + 
Sbjct: 289 ALNDKVISLVKGFMDKAKPVASICHGQQILSAAGVLQGRKCTAYPAVKLNVVLGGATWLE 348

Query: 361 HGG---AVADGKLVTAASWPDLAEFIAHIISLLGITVSF 396
                    DG LVT A+WP   EFI+ +++LLGI VSF
Sbjct: 349 PNPIDRCFTDGNLVTGAAWPGHPEFISQLMALLGIKVSF 387



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,818,210
Number of extensions: 572375
Number of successful extensions: 1496
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)