FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0591600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ThiJ/PfpI domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.68 (0.0471) R2 : 0.291
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.37 (0.124) R2dC : 0.196 R2C : 0.172
β3 : 1.08 (0.135) R2dE : 0.101 R2E : 0.0863
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.259 (0.0992) R2dN8 : 0.0148 R2N8 : 0.0126
σ : 0.884
deviance : 359.92
__
_____
C
peak time of C : 18.2
E
wheather : temperature
threshold : 25.68
memory length : 1257
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
337.89 0.864 5.76 -1.08 1.38 1.46 -2.57 -1.98 0.0347 17.6 25.01 1258 -- --
338.51 0.857 5.71 -0.579 1.36 1.34 -2.65 -- 0.0963 17.5 23.81 1171 -- --
351.57 0.873 5.75 -1.03 1.39 1.37 -- -1.87 0.103 18.2 25.7 1284 -- --
352.54 0.874 5.71 -0.548 1.39 1.23 -- -- 0.163 18.2 25.11 1267 -- --
400.07 0.932 5.79 -1.28 -- 2.11 -- -3.39 -0.181 -- 22.76 558 -- --
397.31 0.934 5.67 -0.177 1.32 -- -2.37 -- 0.308 18.1 -- -- -- --
407.69 0.946 5.68 -0.161 1.33 -- -- -- 0.296 18.8 -- -- -- --
406.48 0.939 5.72 -0.625 -- 1.86 -- -- -0.0379 -- 21.6 591 -- --
359.92 0.884 5.68 -- 1.37 1.08 -- -- 0.259 18.2 25.68 1257 -- --
500.14 1.04 5.65 -0.19 -- -- -- -- 0.27 -- -- -- -- --
408.37 0.945 5.68 -- 1.33 -- -- -- 0.313 18.8 -- -- -- --
415.73 0.95 5.7 -- -- 1.71 -- -- 0.0782 -- 22.61 591 -- --
501.09 1.04 5.65 -- -- -- -- -- 0.291 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.28 humidity 70 720 > th dose independent rect. 17 10
6 328.33 radiation 1 720 < th dose dependent rect. 5 22
9 329.28 radiation 1 720 < th dose independent rect. 5 22
10 329.31 humidity 70 720 > th dose independent sin 14 NA
12 329.62 radiation 1 720 > th dose independent rect. 17 22
14 329.85 humidity 70 720 > th dose independent rect. 17 7
21 331.25 radiation 1 720 < th dose independent rect. 8 19
23 331.43 humidity 70 720 < th dose independent sin 14 NA
30 332.54 radiation 30 4320 < th dose independent rect. 6 2
33 332.73 radiation 30 4320 < th dose independent rect. 2 6
52 334.09 radiation 20 1440 < th dose dependent rect. 16 1
56 334.39 humidity 70 720 > th dose independent rect. 14 20
62 334.70 radiation 10 720 < th dose dependent rect. 9 17
66 334.84 radiation 30 4320 < th dose independent rect. 23 9
70 335.27 humidity 70 720 < th dose independent rect. 13 7
93 335.32 radiation 20 1440 < th dose dependent rect. 16 4
97 335.38 radiation 20 1440 < th dose dependent rect. 16 12
98 335.40 radiation 20 1440 < th dose dependent rect. 16 8
105 335.63 radiation 30 4320 > th dose dependent rect. 7 1
122 335.72 radiation 30 4320 < th dose independent rect. 17 15
126 335.88 radiation 30 4320 < th dose independent rect. 19 13
141 336.61 humidity 70 720 > th dose independent rect. 17 4
143 336.68 radiation 40 1440 < th dose dependent rect. 16 2
145 336.84 temperature 20 720 > th dose dependent rect. 13 17
147 336.86 radiation 10 720 < th dose dependent sin 19 NA
153 336.97 humidity 70 720 < th dose independent rect. 13 21
166 337.05 humidity 70 720 < th dose independent rect. 17 3
178 337.11 radiation 30 4320 > th dose independent rect. 16 16
179 337.13 radiation 40 1440 < th dose dependent rect. 16 4
180 337.16 radiation 10 1440 > th dose independent rect. 11 22
198 337.29 radiation 10 1440 > th dose independent rect. 15 23
199 337.31 radiation 40 1440 < th dose dependent rect. 16 8
200 337.32 radiation 40 1440 < th dose dependent rect. 16 12
211 337.48 radiation 30 4320 > th dose independent rect. 7 1
231 337.57 radiation 1 1440 > th dose dependent rect. 16 1
247 337.71 temperature 10 720 > th dose dependent rect. 13 17
272 338.27 radiation 10 1440 > th dose independent rect. 16 1
276 338.32 radiation 10 1440 < th dose dependent sin 15 NA
304 338.62 radiation 10 720 < th dose dependent rect. 13 13
332 338.80 temperature 20 720 > th dose dependent sin 15 NA
334 338.83 radiation 10 1440 > th dose independent rect. 13 23
341 338.97 radiation 10 1440 > th dose independent rect. 8 23
343 338.98 radiation 10 1440 > th dose independent sin 13 NA
355 339.16 radiation 10 1440 > th dose independent no NA NA
356 339.16 radiation 10 1440 > th dose independent rect. 5 13
422 339.17 temperature 10 720 > th dose dependent sin 14 NA
442 339.25 humidity 70 720 < th dose independent rect. 11 9
455 339.29 wind 7 43200 < th dose independent rect. 13 1
471 339.54 wind 7 43200 > th dose independent rect. 13 1
535 339.98 temperature 30 720 < th dose independent rect. 17 10
543 340.04 wind 7 43200 > th dose dependent rect. 15 1
547 340.10 radiation 10 1440 < th dose dependent rect. 8 10
549 340.11 humidity 50 4320 > th dose independent rect. 10 7
553 340.14 humidity 50 4320 > th dose independent rect. 2 15
554 340.16 humidity 50 4320 > th dose independent rect. 12 5
559 340.21 wind 5 43200 > th dose dependent rect. 13 1
562 340.25 humidity 50 4320 > th dose independent rect. 19 22
568 340.30 humidity 50 4320 > th dose independent rect. 8 9
569 340.30 humidity 50 4320 > th dose independent rect. 6 11
571 340.31 humidity 50 4320 > th dose independent rect. 22 19
577 340.32 humidity 50 4320 > th dose independent rect. 13 23
584 340.40 temperature 15 720 > th dose dependent rect. 17 8
595 340.46 humidity 50 4320 > th dose independent sin 22 NA
597 340.49 humidity 50 4320 > th dose independent rect. 10 19
602 340.50 humidity 50 4320 > th dose independent rect. 10 21
607 340.53 humidity 50 4320 > th dose independent rect. 10 23
622 340.57 humidity 50 4320 > th dose independent rect. 10 14
624 340.59 humidity 50 4320 > th dose independent rect. 10 11
635 340.62 humidity 50 4320 > th dose independent rect. 2 22
644 340.65 humidity 50 4320 > th dose independent rect. 2 18
653 340.66 humidity 50 4320 > th dose independent rect. 8 21
654 340.66 humidity 50 4320 > th dose independent rect. 6 23
659 340.67 humidity 50 4320 > th dose independent rect. 8 23
683 340.74 humidity 50 4320 > th dose independent rect. 6 18
688 340.75 humidity 50 4320 > th dose independent rect. 8 16
691 340.76 humidity 50 4320 > th dose independent rect. 6 15
697 340.77 humidity 50 4320 > th dose independent rect. 8 12
714 340.78 humidity 50 4320 > th dose independent no NA NA
744 340.83 radiation 10 1440 > th dose independent sin 22 NA
813 340.93 radiation 1 720 < th dose independent rect. 1 18
819 340.97 radiation 1 720 < th dose independent rect. 22 21
824 340.99 humidity 50 4320 > th dose independent rect. 16 23
859 341.13 humidity 80 720 < th dose dependent rect. 11 9
876 341.27 wind 7 43200 > th dose dependent rect. 12 9
884 341.36 wind 7 43200 > th dose independent rect. 12 4
930 341.49 temperature 25 720 > th dose dependent rect. 19 3
931 341.49 humidity 80 720 < th dose dependent rect. 13 7
940 341.56 temperature 10 720 > th dose dependent rect. 3 22
964 341.66 temperature 25 720 > th dose dependent rect. 17 6