BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0591600 Os11g0591600|AK058631
(396 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38860.2 | chr2:16233629-16235207 REVERSE LENGTH=399 328 3e-90
AT3G54600.1 | chr3:20211048-20212876 FORWARD LENGTH=400 308 2e-84
AT3G02720.1 | chr3:586336-588088 FORWARD LENGTH=389 291 3e-79
>AT2G38860.2 | chr2:16233629-16235207 REVERSE LENGTH=399
Length = 398
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 238/406 (58%), Gaps = 28/406 (6%)
Query: 5 KKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDLYTEL 64
K L+LCGDYME YE VP Y L +FGV+V CV+P + GD C+ + H+FLG +LYTEL
Sbjct: 7 KSALLLCGDYMEAYETIVPLYVLQSFGVSVHCVSPNRNA-GDRCVMSAHDFLGLELYTEL 65
Query: 65 PGHRFXXXXXXXXXXXXXXXXXXXLVVPGGRFVERLSVDPLAVSLVAAFAGEGETATRRR 124
+ +++PGGRF E LS D V LVA FA ++
Sbjct: 66 VVDQLTLNANFDDVTPENYDV---IIIPGGRFTELLSADEKCVDLVARFA------ESKK 116
Query: 125 PVVVTCHSQLLLAAAGAMRG-VRCTAFFSMRRVVELAGGTW-VEPDPLGL-----CVADG 177
+ +CHSQ++L AAG + G V+CTAF S++ ++EL+GG W +P + CV DG
Sbjct: 117 LIFTSCHSQVMLMAAGILAGGVKCTAFESIKPLIELSGGEWWQQPGIQSMFEITDCVKDG 176
Query: 178 NVLSAIGWPA--HGEIIREXXXXXXXXXXXXXXXXXXFLCADYVDDYEANVPFRALAGVG 235
N +S +GWP HG + FL DYV+DY NVPFRAL +G
Sbjct: 177 NFMSTVGWPTLGHGIKLLLESLGGKVCSLEKKQASVLFLIGDYVEDYGINVPFRALQALG 236
Query: 236 CRVEAACPTKRKGEACVTAIYD-----ATPAAASDERRGHNFAVTADWGDVDADRYACVV 290
C+V+A P K+KGE C TA+YD PA E+RGHNF VTA W D+ D Y CVV
Sbjct: 237 CKVDAVTPNKKKGEVCATAVYDLEDGRQIPA----EKRGHNFFVTASWDDICVDDYDCVV 292
Query: 291 VPGGRAPELLATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVV 350
VPGGR+PELL +AVALV+ FA K KV A+I QG LLLAA G+L G+ CASG +V+
Sbjct: 293 VPGGRSPELLVMNEKAVALVKSFAEKDKVFAAIGQGKLLLAATGVLKGKRCASGKGMKVM 352
Query: 351 AGLAGAASVRHGGAVADGKLVTAASWPDLAEFIAHIISLLGITVSF 396
+AG +V G V DGK+VTAAS DL F+ + + LG+TV F
Sbjct: 353 VKVAGGEAVMEKGCVTDGKVVTAASATDLPAFLFDLSTALGLTVMF 398
>AT3G54600.1 | chr3:20211048-20212876 FORWARD LENGTH=400
Length = 399
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 228/403 (56%), Gaps = 21/403 (5%)
Query: 5 KKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDLYTEL 64
K VLMLCG++ME YE VP Y L AFGV+V CV+PG+K GD C+ A H+ LG ++YTEL
Sbjct: 7 KSVLMLCGEFMEAYETIVPLYVLQAFGVSVHCVSPGRKT-GDKCVMAAHDLLGLEIYTEL 65
Query: 65 PGHRFXXXXXXXXXXXXXXXXXXXLVVPGGRFVERLSVDPLAVSLVAAFAGEGETATRRR 124
+++PGGRF E LS D VSLVA FA ++
Sbjct: 66 VVDHLTLNANFDGVIPDQYDA---IIIPGGRFTELLSADEKCVSLVARFA------ELKK 116
Query: 125 PVVVTCHSQLLLAAAGAMRG-VRCTAFFSMRRVVELAGGTW-VEPDPLGL-----CVADG 177
+ +CHSQL LAAAG + G ++CTAF SM+ +EL+GG W +P L CV DG
Sbjct: 117 LIFTSCHSQLFLAAAGLLTGGMKCTAFESMKPFIELSGGAWWQQPGVQTLFEITDCVKDG 176
Query: 178 NVLSAIGWPAHG---EIIREXXXXXXXXXXXXXXXXXXFLCADYVDDYEANVPFRALAGV 234
+ +S +GWP G +++ E FL D V+DY NVPF+A +
Sbjct: 177 SFMSTMGWPTLGHSLKVLLESLGSKISSSKENHQTSLLFLIGDCVEDYSINVPFKAFQAL 236
Query: 235 GCRVEAACPTKRKGEACVTAIYDATPA-AASDERRGHNFAVTADWGDVDADRYACVVVPG 293
GC+V+A PTK++GE C T ++D E+ GHNF VT W DV D Y C+VVPG
Sbjct: 237 GCKVDAVTPTKKRGEKCATIVHDLEDGRQLPTEKFGHNFYVTVAWDDVSVDDYDCIVVPG 296
Query: 294 GRAPELLATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVVAGL 353
GR+PELL +AV LVR+F KGK VA+I G+ LLAA G L + CAS T+V +
Sbjct: 297 GRSPELLVMNPKAVELVRKFVEKGKFVAAIGMGNWLLAATGALKKKRCASSYGTKVAVKV 356
Query: 354 AGAASVRHGGAVADGKLVTAASWPDLAEFIAHIISLLGITVSF 396
AG V V D KLVTAAS DL F+ + + LG++V F
Sbjct: 357 AGGEIVESERCVTDDKLVTAASTSDLPAFLYALSTALGLSVVF 399
>AT3G02720.1 | chr3:586336-588088 FORWARD LENGTH=389
Length = 388
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 221/399 (55%), Gaps = 14/399 (3%)
Query: 1 MAPCKKVLMLCGDYMEDYEAAVPFYALAAFGVAVDCVAPGKKPPGDACLTAVHEFLGHDL 60
MA + VL+LCGDYMEDYE VPF AL AFG+ V V PGKK GD+C TAVH+F GH
Sbjct: 1 MANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKA-GDSCPTAVHDFCGHQT 59
Query: 61 YTELPGHRFXXXXXXXXXXXXXXXXXXXLVVPGGRFVERLSVDPLAVSLVAAFAGEGETA 120
Y E GH F LV+PGGR E L++ V LV F+ G
Sbjct: 60 YFESRGHNFTLNATFDEVDLSKYDG---LVIPGGRAPEYLALTASVVELVKEFSRSG--- 113
Query: 121 TRRRPVVVTCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWVEPDPLGLCVADGNVL 180
+P+ CH QL+LAAA + G +CTA+ ++ + AG WVEP +CV DG+++
Sbjct: 114 ---KPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLI 170
Query: 181 SAIGWPAHGEIIREXXXXXXXXXXXXXXXXXXFLCADYVDDYEANVPFRALAGVGCRVEA 240
+A + H E I + FLC DY++DYE VPF++L +GC+V+A
Sbjct: 171 TAATYEGHPEFI-QLFVKALGGKITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDA 229
Query: 241 ACPTKRKGEACVTAIYDATPAAASDERRGHNFAVTADWGDVDADRYACVVVPGGRAPELL 300
CP K+ G+ C TAI+D E+ GH FA+T ++ D+ + Y +V+PGGRAPE L
Sbjct: 230 VCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYL 289
Query: 301 ATRGEAVALVREFAGKGKVVASIDQGHLLLAAVGLLDGRSCASGVATRVVAGLAGAASVR 360
A + +V+EF K VASI G +LAA G+L GR C + A ++ L G +
Sbjct: 290 ALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLE 349
Query: 361 HGG---AVADGKLVTAASWPDLAEFIAHIISLLGITVSF 396
DG LVT A+WP EF++ +++LLGI VSF
Sbjct: 350 PDPIDRCFTDGNLVTGAAWPGHPEFVSQLMALLGIQVSF 388
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,806,082
Number of extensions: 282910
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 3
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)