Os04g0671700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C56, PfpI family protein.
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Os04g0671700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C56, PfpI family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.68 | 0.238 | 14.3 | 0.362 | 1.58 | -1.02 | -0.874 | -0.163 | 0.00958 | 21.8 | 25.4 | 1717 | -- | -- |
| 25.7 | 0.236 | 14.3 | 0.33 | 1.58 | -1 | -0.871 | -- | 0.000935 | 21.8 | 25.57 | 1725 | -- | -- |
| 28.58 | 0.249 | 14.3 | 0.39 | 1.57 | -1 | -- | -0.138 | 0.0142 | 21.8 | 25.56 | 1742 | -- | -- |
| 28.6 | 0.249 | 14.3 | 0.358 | 1.57 | -0.994 | -- | -- | 0.00269 | 21.8 | 25.7 | 1750 | -- | -- |
| 127.92 | 0.527 | 14.3 | 0.0585 | -- | -2.1 | -- | 0.65 | -0.104 | -- | 30.37 | 735 | -- | -- |
| 40.17 | 0.297 | 14.3 | 0.656 | 1.59 | -- | -0.84 | -- | 0.226 | 21.8 | -- | -- | -- | -- |
| 42.86 | 0.307 | 14.3 | 0.688 | 1.59 | -- | -- | -- | 0.227 | 21.8 | -- | -- | -- | -- |
| 127.01 | 0.525 | 14.3 | 0.159 | -- | -2 | -- | -- | -0.17 | -- | 29.6 | 747 | -- | -- |
| 31.54 | 0.262 | 14.3 | -- | 1.58 | -1.17 | -- | -- | -0.0675 | 21.8 | 25.44 | 1774 | -- | -- |
| 193.91 | 0.651 | 14.2 | 0.704 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 55.33 | 0.348 | 14.3 | -- | 1.59 | -- | -- | -- | 0.15 | 21.8 | -- | -- | -- | -- |
| 127.54 | 0.526 | 14.3 | -- | -- | -2.05 | -- | -- | -0.197 | -- | 29.6 | 753 | -- | -- |
| 206.98 | 0.672 | 14.3 | -- | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.56 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 9 | 25.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 20 | 26.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 37 | 26.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 49 | 26.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 56 | 26.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 70 | 26.39 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 74 | 26.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 77 | 26.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 81 | 26.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 82 | 26.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 124 | 26.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 225 | 26.66 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 247 | 26.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 261 | 26.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 295 | 26.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 415 | 26.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 431 | 26.93 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 440 | 26.94 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 499 | 27.00 | temperature | 20 | 270 | > th | dose dependent | sin | 9 | NA |
| 537 | 27.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 587 | 27.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 635 | 27.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 687 | 27.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 715 | 27.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 730 | 27.15 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 731 | 27.15 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 766 | 27.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 805 | 27.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 859 | 27.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 873 | 27.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 882 | 27.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 895 | 27.24 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 924 | 27.25 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 20 |
| 974 | 27.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 20 |
| 977 | 27.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 980 | 27.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 987 | 27.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |