BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0587300 Os11g0587300|Os11g0587300
         (735 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0587300  Conserved hypothetical protein                      559   e-159
Os10g0116400  Conserved hypothetical protein                      105   8e-23

>Os11g0587300 Conserved hypothetical protein
          Length = 735

 Score =  559 bits (1441), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/315 (91%), Positives = 289/315 (91%)

Query: 1   MGADEEEERRMHQGCMAGFFHLFDRPQILSGKRLHHQPRRLLXXXXXXXXXXXXXMQLDR 60
           MGADEEEERRMHQGCMAGFFHLFDRPQILSGKRLHHQPRRLL             MQLDR
Sbjct: 1   MGADEEEERRMHQGCMAGFFHLFDRPQILSGKRLHHQPRRLLSSSSGSATPSERSMQLDR 60

Query: 61  SPERATPLPSPDMTPPAAPRPSLQLPPLETKDGGGAPAVWRLPRLSLDSRAVVDARGKLR 120
           SPERATPLPSPDMTPPAAPRPSLQLPPLETKDGGGAPAVWRLPRLSLDSRAVVDARGKLR
Sbjct: 61  SPERATPLPSPDMTPPAAPRPSLQLPPLETKDGGGAPAVWRLPRLSLDSRAVVDARGKLR 120

Query: 121 PRDIRTXXXXXXXXXXXXXDERRSPSVVARLMGLDALPRGAPDERDAAPCGGELRRSASE 180
           PRDIRT             DERRSPSVVARLMGLDALPRGAPDERDAAPCGGELRRSASE
Sbjct: 121 PRDIRTSPAAPPSPGAGGGDERRSPSVVARLMGLDALPRGAPDERDAAPCGGELRRSASE 180

Query: 181 RVPRDPACFRFVDPSFFERPSPPVTPQQQRPSSPAVEAALRRAPDPACPRGGIQRRSRFD 240
           RVPRDPACFRFVDPSFFERPSPPVTPQQQRPSSPAVEAALRRAPDPACPRGGIQRRSRFD
Sbjct: 181 RVPRDPACFRFVDPSFFERPSPPVTPQQQRPSSPAVEAALRRAPDPACPRGGIQRRSRFD 240

Query: 241 AHDVFPEPAKRVVDSAAAGHGEIALYGEIERRLRKRGIAEPARDLETLKQILEALQLKGL 300
           AHDVFPEPAKRVVDSAAAGHGEIALYGEIERRLRKRGIAEPARDLETLKQILEALQLKGL
Sbjct: 241 AHDVFPEPAKRVVDSAAAGHGEIALYGEIERRLRKRGIAEPARDLETLKQILEALQLKGL 300

Query: 301 LRHTPPPPVSSLRTQ 315
           LRHTPPPPVSSLRTQ
Sbjct: 301 LRHTPPPPVSSLRTQ 315




 Score =  530 bits (1364), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/357 (78%), Positives = 280/357 (78%)

Query: 379 QRRVSPAQSPRYQPPLRKPSTGDRSRIARRGGHGSAALSPXXXXXXXXXXXXXXXXXXXX 438
           QRRVSPAQSPRYQPPLRKPSTGDRSRIARRGGHGSAALSP                    
Sbjct: 379 QRRVSPAQSPRYQPPLRKPSTGDRSRIARRGGHGSAALSPDDDASTTFSDGTSSGSLSAS 438

Query: 439 XRWDFEVSPPPPPMAATISEFLSSNESFAMQQRARPDELRTDRGLLERCGKLLSSIQAFT 498
            RWDFEVSPPPPPMAATISEFLSSNESFAMQQRARPDELRTDRGLLERCGKLLSSIQAFT
Sbjct: 439 SRWDFEVSPPPPPMAATISEFLSSNESFAMQQRARPDELRTDRGLLERCGKLLSSIQAFT 498

Query: 499 AGDDQQPSPVSVLDAAAFLADEDSPSSSGSKRAIFFGXXXXXXXXXXXXXXXXXXXXXXX 558
           AGDDQQPSPVSVLDAAAFLADEDSPSSSGSKRAIFFG                       
Sbjct: 499 AGDDQQPSPVSVLDAAAFLADEDSPSSSGSKRAIFFGAAAPAPHAATASASDQDDDDDQW 558

Query: 559 XXXTVGPDVDPDYAYVAEVVKVFDRTTRDPSAVYXXXXXXXXXXXXXXCPHHRMLLCAAA 618
              TVGPDVDPDYAYVAEVVKVFDRTTRDPSAVY              CPHHRMLLCAAA
Sbjct: 559 DTWTVGPDVDPDYAYVAEVVKVFDRTTRDPSAVYAAAAKTTTGGDDDTCPHHRMLLCAAA 618

Query: 619 VEALDRRRAACAWDPVSWLRGGELVDHVWXXXXXXXXXXXXXXXXLDLNELIRGGVVRDL 678
           VEALDRRRAACAWDPVSWLRGGELVDHVW                LDLNELIRGGVVRDL
Sbjct: 619 VEALDRRRAACAWDPVSWLRGGELVDHVWAEVRRAREPVAAPDADLDLNELIRGGVVRDL 678

Query: 679 AADHHRWPPSSSQLLPGAEVADAVLQIERLVFKDLVADTIRELADVGLRLPRRKLVF 735
           AADHHRWPPSSSQLLPGAEVADAVLQIERLVFKDLVADTIRELADVGLRLPRRKLVF
Sbjct: 679 AADHHRWPPSSSQLLPGAEVADAVLQIERLVFKDLVADTIRELADVGLRLPRRKLVF 735



>Os10g0116400 Conserved hypothetical protein
          Length = 140

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 54/60 (90%)

Query: 474 PDELRTDRGLLERCGKLLSSIQAFTAGDDQQPSPVSVLDAAAFLADEDSPSSSGSKRAIF 533
           PDELRT RGLLERCGKLLSSIQAFTAGDDQQP  +SVLDAAAFLADEDS SSS SKR IF
Sbjct: 61  PDELRTYRGLLERCGKLLSSIQAFTAGDDQQPCQMSVLDAAAFLADEDSLSSSRSKRTIF 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,727,130
Number of extensions: 1111631
Number of successful extensions: 8472
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 8469
Number of HSP's successfully gapped: 3
Length of query: 735
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 627
Effective length of database: 11,396,689
Effective search space: 7145724003
Effective search space used: 7145724003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)