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Os10g0116400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.72 (0.0284) R2 : 0.759
β1 : -0.936 (0.104) R2dD : 0.0447 R2D : 0.0265
β2 : 1.89 (0.0755) R2dC : 0.346 R2C : 0.133
β3 : -1.91 (0.0658) R2dE : 0.468 R2E : 0.312
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.721 (0.0607) R2dN8 : 0.101 R2N8 : 0.0568
σ : 0.531
deviance : 130.13
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_____
C
peak time of C : 5.01
E
wheather : temperature
threshold : 19.1
memory length : 200
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.7
open length of G : 7.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.66 0.533 8.73 -0.954 1.91 -1.96 0.676 -0.666 -0.726 4.85 19 209 18.5 7.73
129.79 0.531 8.72 -0.954 1.91 -1.95 0.475 -- -0.733 4.92 19.1 200 18.6 7.69
129.47 0.53 8.73 -0.948 1.92 -1.97 -- -0.595 -0.738 4.84 19.05 201 18.6 7.73
130.13 0.531 8.72 -0.936 1.89 -1.91 -- -- -0.721 5.01 19.1 200 18.7 7.6
263.06 0.755 8.74 -0.983 -- -1.61 -- -0.45 -0.66 -- 19.04 90 18.6 7.75
213.13 0.684 8.7 -1.2 2.17 -- 0.902 -- -0.781 8.13 -- -- -- --
215.58 0.688 8.7 -1.17 2.17 -- -- -- -0.782 8.11 -- -- -- --
260.48 0.752 8.74 -0.92 -- -1.7 -- -- -0.659 -- 19.05 119 18.3 7.32
153.12 0.576 8.72 -- 1.91 -1.97 -- -- -0.642 4.95 19.06 202 18.8 7.54
473.23 1.02 8.76 -1.15 -- -- -- -- -0.756 -- -- -- -- --
251.84 0.742 8.68 -- 2.16 -- -- -- -0.652 8.15 -- -- -- --
258.47 0.749 8.81 -- -- -2.17 -- -- -0.433 -- 20.5 357 15.5 7.67
508.37 1.05 8.73 -- -- -- -- -- -0.628 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.16 temperature 20.0 270 > th dose independent rect. 18 8
6 143.01 temperature 10.0 270 > th dose dependent rect. 18 8
10 145.30 temperature 20.0 270 > th dose independent rect. 6 19
27 150.08 temperature 20.0 270 > th dose independent rect. 19 18
35 151.58 temperature 20.0 10 > th dose independent rect. 20 8
36 151.89 humidity 50.0 90 > th dose dependent rect. 19 8
37 151.93 precipitation 0.1 270 < th dose independent rect. 14 16
38 151.93 precipitation 0.1 270 < th dose dependent rect. 14 16
41 152.20 wind 7.0 270 < th dose independent rect. 14 16
42 152.35 temperature 20.0 90 > th dose independent rect. 19 20
44 152.51 precipitation 0.1 90 < th dose independent rect. 3 16
45 152.51 precipitation 0.1 90 < th dose dependent rect. 3 16
57 153.57 temperature 30.0 90 < th dose independent rect. 19 8
58 153.57 humidity 50.0 90 > th dose independent rect. 19 8
60 153.57 atmosphere 995.0 90 > th dose independent rect. 19 8
61 153.57 radiation 1.0 90 < th dose independent rect. 19 8
66 153.57 temperature 10.0 90 > th dose independent rect. 3 16
67 153.57 atmosphere 1015.0 90 < th dose independent rect. 3 16
68 153.57 radiation 1.0 90 < th dose dependent rect. 19 8
75 153.80 wind 9.0 90 < th dose independent rect. 19 8
76 153.95 temperature 15.0 270 > th dose independent rect. 6 8
78 154.04 wind 9.0 270 < th dose independent rect. 6 8
83 154.39 precipitation 0.1 270 < th dose independent rect. 6 8
84 154.39 precipitation 0.1 270 < th dose dependent rect. 6 8
93 154.49 atmosphere 995.0 270 > th dose independent rect. 6 8
94 154.49 atmosphere 1015.0 270 < th dose independent rect. 6 8
95 154.49 temperature 10.0 270 > th dose independent rect. 14 16
107 154.93 wind 9.0 90 < th dose independent rect. 3 16
116 155.54 precipitation 0.1 90 < th dose independent rect. 19 8
117 155.54 precipitation 0.1 90 < th dose dependent rect. 19 8
129 156.36 radiation 40.0 270 < th dose independent rect. 14 16
130 156.38 temperature 10.0 10 > th dose dependent rect. 20 8
134 156.51 radiation 1.0 270 < th dose dependent rect. 11 15
143 156.81 radiation 1.0 270 < th dose dependent rect. 5 21
161 157.35 temperature 10.0 270 > th dose dependent rect. 19 18
162 157.37 humidity 50.0 270 > th dose independent rect. 6 8
187 157.69 atmosphere 1015.0 90 < th dose independent rect. 19 8
195 157.86 radiation 1.0 270 < th dose independent rect. 11 15
201 157.98 radiation 1.0 270 < th dose dependent rect. 7 19
263 159.32 radiation 1.0 270 < th dose independent rect. 7 19
273 159.63 radiation 1.0 270 > th dose independent rect. 6 8
316 160.01 wind 5.0 270 < th dose independent rect. 1 6
325 160.15 temperature 20.0 10 > th dose independent rect. 20 19
332 160.27 atmosphere 995.0 90 > th dose independent rect. 3 16
433 161.39 wind 1.0 270 > th dose independent rect. 14 15
455 161.66 temperature 20.0 10 > th dose independent rect. 8 20
460 161.82 wind 9.0 90 < th dose dependent rect. 19 8
465 161.95 atmosphere 995.0 270 > th dose independent rect. 14 16
489 162.34 wind 1.0 270 > th dose independent rect. 13 6
497 162.50 precipitation 0.1 270 < th dose independent rect. 13 6
498 162.50 precipitation 0.1 270 < th dose dependent rect. 13 6
499 162.51 precipitation 0.1 270 < th dose independent rect. 1 6
501 162.51 precipitation 0.1 270 < th dose dependent rect. 1 6
502 162.53 radiation 10.0 14400 < th dose dependent rect. 20 7
503 162.56 wind 9.0 270 < th dose independent rect. 13 6
507 162.62 wind 9.0 270 < th dose independent rect. 19 18
512 162.72 temperature 10.0 270 > th dose independent rect. 13 6
514 162.72 atmosphere 1010.0 270 < th dose independent rect. 13 6
518 162.72 atmosphere 995.0 270 > th dose independent rect. 19 18
552 163.29 radiation 30.0 270 < th dose dependent rect. 1 6
572 163.62 atmosphere 1010.0 270 < th dose independent rect. 1 6
573 163.63 radiation 10.0 270 < th dose independent rect. 1 6
577 163.65 wind 9.0 270 < th dose dependent rect. 2 4
579 163.70 wind 9.0 270 < th dose dependent rect. 1 6
600 163.78 temperature 10.0 270 > th dose independent rect. 1 6
602 163.78 temperature 30.0 270 < th dose independent rect. 1 6
603 163.78 humidity 50.0 270 > th dose independent rect. 1 6
605 163.78 atmosphere 995.0 270 > th dose independent rect. 1 6
607 163.78 radiation 40.0 270 < th dose independent rect. 1 6
608 163.78 wind 1.0 270 > th dose independent rect. 6 8
630 164.00 humidity 50.0 270 > th dose independent rect. 19 18
686 164.33 atmosphere 1015.0 270 < th dose independent rect. 19 18
696 164.40 radiation 1.0 270 > th dose independent rect. 13 17
703 164.42 wind 9.0 270 < th dose independent rect. 7 18
732 164.81 radiation 40.0 90 < th dose dependent rect. 15 16
752 164.90 wind 1.0 270 > th dose independent rect. 18 7
766 165.07 radiation 40.0 90 < th dose dependent rect. 3 16
779 165.18 radiation 1.0 270 < th dose dependent sin 16 NA
811 165.33 radiation 1.0 270 > th dose independent rect. 18 20
828 165.46 humidity 50.0 270 > th dose independent rect. 6 19
850 165.55 wind 7.0 90 < th dose independent rect. 15 4
880 165.64 atmosphere 1015.0 270 < th dose independent rect. 6 19
921 166.00 wind 1.0 270 > th dose independent rect. 1 17
936 166.16 temperature 10.0 10 > th dose dependent rect. 20 19
944 166.26 precipitation 0.1 270 < th dose independent rect. 15 2
946 166.26 precipitation 0.1 270 < th dose dependent rect. 15 2
951 166.32 atmosphere 995.0 270 > th dose independent rect. 6 19
960 166.42 wind 1.0 270 > th dose independent rect. 1 5
981 166.56 temperature 10.0 270 > th dose dependent rect. 6 7
991 166.64 precipitation 0.1 270 < th dose independent rect. 19 18
993 166.64 precipitation 0.1 270 < th dose dependent rect. 19 18