BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0116400 Os10g0116400|J065127K22
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0116400  Conserved hypothetical protein                      244   1e-65
Os11g0587300  Conserved hypothetical protein                      106   4e-24
Os09g0482820  Hypothetical protein                                 66   9e-12

>Os10g0116400 Conserved hypothetical protein
          Length = 140

 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 20  ANEVEAKVRLAMESEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLS 79
           ANEVEAKVRLAMESEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLS
Sbjct: 20  ANEVEAKVRLAMESEQGKKLRDHVEARREATAMTWKDAARCPDELRTYRGLLERCGKLLS 79

Query: 80  SIQAFTAGDDQQPCQMSVLDAAAFLADEDSLSSSRSKRTIFTPALTSSGLTAACSSAEAS 139
           SIQAFTAGDDQQPCQMSVLDAAAFLADEDSLSSSRSKRTIFTPALTSSGLTAACSSAEAS
Sbjct: 80  SIQAFTAGDDQQPCQMSVLDAAAFLADEDSLSSSRSKRTIFTPALTSSGLTAACSSAEAS 139

Query: 140 C 140
           C
Sbjct: 140 C 140



>Os11g0587300 Conserved hypothetical protein
          Length = 735

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 54/60 (90%)

Query: 61  PDELRTYRGLLERCGKLLSSIQAFTAGDDQQPCQMSVLDAAAFLADEDSLSSSRSKRTIF 120
           PDELRT RGLLERCGKLLSSIQAFTAGDDQQP  +SVLDAAAFLADEDS SSS SKR IF
Sbjct: 474 PDELRTDRGLLERCGKLLSSIQAFTAGDDQQPSPVSVLDAAAFLADEDSPSSSGSKRAIF 533



>Os09g0482820 Hypothetical protein
          Length = 79

 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 32/39 (82%)

Query: 20 ANEVEAKVRLAMESEQGKKLRDHVEARREATAMTWKDAA 58
          A EVEAKVRL MESEQG+KLRD VEA REATAM WKD  
Sbjct: 17 AGEVEAKVRLVMESEQGRKLRDRVEAHREATAMAWKDGG 55



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.123    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,634,449
Number of extensions: 127186
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 3
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)