BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0582300 Os11g0582300|AK100485
(823 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0582300 Similar to GTP-binding protein-like 1550 0.0
Os12g0604600 Similar to GTP-binding protein-like 930 0.0
Os01g0575000 Root hair defective 3 GTP-binding family protein 920 0.0
AK109999 260 3e-69
AK110060 250 3e-66
>Os11g0582300 Similar to GTP-binding protein-like
Length = 823
Score = 1550 bits (4014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 754/772 (97%), Positives = 754/772 (97%)
Query: 1 MEVPISGGGGGERFCHAAQVVGADGEMDXXXXXXXXXXXXXXXXXXSYAVVSIVGPQGSG 60
MEVPISGGGGGERFCHAAQVVGADGEMD SYAVVSIVGPQGSG
Sbjct: 1 MEVPISGGGGGERFCHAAQVVGADGEMDGEAMARFAAGAGLLGRGLSYAVVSIVGPQGSG 60
Query: 61 KSTLLNQLFGTSFTEMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLEGTDGRERGEDDTA 120
KSTLLNQLFGTSFTEMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLEGTDGRERGEDDTA
Sbjct: 61 KSTLLNQLFGTSFTEMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLEGTDGRERGEDDTA 120
Query: 121 FEKQSALFALAVSDIVMINLWCHDIGREHAANRPLLKTIFEVLMRLFSPRKTTLLLVIRD 180
FEKQSALFALAVSDIVMINLWCHDIGREHAANRPLLKTIFEVLMRLFSPRKTTLLLVIRD
Sbjct: 121 FEKQSALFALAVSDIVMINLWCHDIGREHAANRPLLKTIFEVLMRLFSPRKTTLLLVIRD 180
Query: 181 KTKTPLEYLTQALKEDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKENLFKEQV 240
KTKTPLEYLTQALKEDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKENLFKEQV
Sbjct: 181 KTKTPLEYLTQALKEDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKENLFKEQV 240
Query: 241 GQLRQRFIHSIAPGGLAADRRGVIPASGFCLSALQIWKVIRENKDLNLPAHKIMVATVRC 300
GQLRQRFIHSIAPGGLAADRRGVIPASGFCLSALQIWKVIRENKDLNLPAHKIMVATVRC
Sbjct: 241 GQLRQRFIHSIAPGGLAADRRGVIPASGFCLSALQIWKVIRENKDLNLPAHKIMVATVRC 300
Query: 301 EEIADEKLRSFISDKGWLELETAANSGLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRT 360
EEIADEKLRSFISDKGWLELETAANSGLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRT
Sbjct: 301 EEIADEKLRSFISDKGWLELETAANSGLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRT 360
Query: 361 AKRQQLESEILKHTYDAFKKMLEHLHHVVLNKFKSDLEQSLRSGEGFAASARYCVQSSMA 420
AKRQQLESEILKHTYDAFKKMLEHLHHVVLNKFKSDLEQSLRSGEGFAASARYCVQSSMA
Sbjct: 361 AKRQQLESEILKHTYDAFKKMLEHLHHVVLNKFKSDLEQSLRSGEGFAASARYCVQSSMA 420
Query: 421 EFDAGLRDALVKHAEWDTTKVRSKLEQHIEAHATSVRGTKLAELKANYEKKLLDTLAGPV 480
EFDAGLRDALVKHAEWDTTKVRSKLEQHIEAHATSVRGTKLAELKANYEKKLLDTLAGPV
Sbjct: 421 EFDAGLRDALVKHAEWDTTKVRSKLEQHIEAHATSVRGTKLAELKANYEKKLLDTLAGPV 480
Query: 481 QSILETGEKDSWACIRRLYRHATESAILAFSASLSEFELDQTTIRKMVMELREHARSIVE 540
QSILETGEKDSWACIRRLYRHATESAILAFSASLSEFELDQTTIRKMVMELREHARSIVE
Sbjct: 481 QSILETGEKDSWACIRRLYRHATESAILAFSASLSEFELDQTTIRKMVMELREHARSIVE 540
Query: 541 EKAREEAGNVLMRMKERFSTVLSRDKDSMPRTWKGNEDIRAITREARLAALRLMSVMAAV 600
EKAREEAGNVLMRMKERFSTVLSRDKDSMPRTWKGNEDIRAITREARLAALRLMSVMAAV
Sbjct: 541 EKAREEAGNVLMRMKERFSTVLSRDKDSMPRTWKGNEDIRAITREARLAALRLMSVMAAV 600
Query: 601 RLDDKPDKIDRALTTALLDGGPLSQKRSIEFTSDPLASSTWEEVSEKNTLITPVQCKSIW 660
RLDDKPDKIDRALTTALLDGGPLSQKRSIEFTSDPLASSTWEEVSEKNTLITPVQCKSIW
Sbjct: 601 RLDDKPDKIDRALTTALLDGGPLSQKRSIEFTSDPLASSTWEEVSEKNTLITPVQCKSIW 660
Query: 661 RQFNAETEYAVAQAISMQEAHRRSNNWLPPAWTVLLLAILGYNEFIFLLRNPLYLLGLFV 720
RQFNAETEYAVAQAISMQEAHRRSNNWLPPAWTVLLLAILGYNEFIFLLRNPLYLLGLFV
Sbjct: 661 RQFNAETEYAVAQAISMQEAHRRSNNWLPPAWTVLLLAILGYNEFIFLLRNPLYLLGLFV 720
Query: 721 AFVVSYAAWLQYDITAYFRHGTLSGLLTITSGFLPTIMDIITAVINMSHNQK 772
AFVVSYAAWLQYDITAYFRHGTLSGLLTITSGFLPTIMDIITAVINMSHNQK
Sbjct: 721 AFVVSYAAWLQYDITAYFRHGTLSGLLTITSGFLPTIMDIITAVINMSHNQK 772
>Os12g0604600 Similar to GTP-binding protein-like
Length = 854
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/750 (58%), Positives = 565/750 (75%)
Query: 15 CHAAQVVGADGEMDXXXXXXXXXXXXXXXXXXSYAVVSIVGPQGSGKSTLLNQLFGTSFT 74
A Q++ +GE SYAVVSI+GPQ SGKSTLLNQLFGT+F
Sbjct: 7 AEAVQLIDGEGEFAADSAERFMAAAGVAGCGLSYAVVSIMGPQSSGKSTLLNQLFGTNFR 66
Query: 75 EMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSD 134
EMDA +GRSQTTKGIWIA+ VG+EP TVVMDLEGTDGRERGEDDTAFEKQS+LFALA+SD
Sbjct: 67 EMDAFRGRSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLFALAISD 126
Query: 135 IVMINLWCHDIGREHAANRPLLKTIFEVLMRLFSPRKTTLLLVIRDKTKTPLEYLTQALK 194
IV+IN+WCHDIGRE AAN+PLLKT+F+V+MRLFSPRKTTLL VIRDKT+TPLE+L L+
Sbjct: 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEHLEPVLR 186
Query: 195 EDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKENLFKEQVGQLRQRFIHSIAPG 254
EDIQKIWN+V KPE +K+ +SEFFNV+VTAL S+EEKE F+EQV QLRQRF +SIAPG
Sbjct: 187 EDIQKIWNSVAKPEAHKDTPISEFFNVQVTALPSFEEKEEQFREQVQQLRQRFSNSIAPG 246
Query: 255 GLAADRRGVIPASGFCLSALQIWKVIRENKDLNLPAHKIMVATVRCEEIADEKLRSFISD 314
GLA DRRGV+PASGF S+ QIWKVIRENKDL+LPAHK+MVATVRC+EIA EK SD
Sbjct: 247 GLAGDRRGVVPASGFLFSSQQIWKVIRENKDLDLPAHKVMVATVRCDEIAHEKFSCLTSD 306
Query: 315 KGWLELETAANSGLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRTAKRQQLESEILKHT 374
W+ELE+ SG VPGFGKKL I+D ++ EYD EA+YFDE VRTAKRQ L+S +L
Sbjct: 307 AEWMELESDVQSGPVPGFGKKLGYIVDVHMQEYDKEAIYFDEAVRTAKRQLLKSRVLNLV 366
Query: 375 YDAFKKMLEHLHHVVLNKFKSDLEQSLRSGEGFAASARYCVQSSMAEFDAGLRDALVKHA 434
AF+KML HL L K+K++L +L SG+GFAA+ R +S++ EFD G DA+++ A
Sbjct: 367 QPAFQKMLAHLRTRALEKYKTELNLTLESGKGFAAAVRDTTESNLNEFDQGCADAVIEQA 426
Query: 435 EWDTTKVRSKLEQHIEAHATSVRGTKLAELKANYEKKLLDTLAGPVQSILETGEKDSWAC 494
+WD +K+ K+ + +E H S+R KL+EL + ++KL L PV+S+ + +WA
Sbjct: 427 DWDYSKILEKVRRDVEDHTLSIREGKLSELTNHAKEKLRKALVEPVESLFDAAGPSTWAS 486
Query: 495 IRRLYRHATESAILAFSASLSEFELDQTTIRKMVMELREHARSIVEEKAREEAGNVLMRM 554
IR L++ TE+ + F +L+ FE++ T MV +LR++ARSIVE KA+EEAG VL+ M
Sbjct: 487 IRNLFKRETEAILPEFQKNLAGFEMESATSEGMVSKLRDYARSIVENKAKEEAGKVLIHM 546
Query: 555 KERFSTVLSRDKDSMPRTWKGNEDIRAITREARLAALRLMSVMAAVRLDDKPDKIDRALT 614
KERF+TV S DKDS+PR W G ED+RAI ++AR AAL+L+SV+AA+R D+KPDKI++ LT
Sbjct: 547 KERFTTVFSHDKDSIPRVWTGKEDVRAIAKDARSAALKLLSVLAAIRWDEKPDKIEKILT 606
Query: 615 TALLDGGPLSQKRSIEFTSDPLASSTWEEVSEKNTLITPVQCKSIWRQFNAETEYAVAQA 674
+ LLDG + + +SDPLAS+TWEEVS K TLITP QCKS+W+QF AETE+A+ QA
Sbjct: 607 STLLDGSVTPKSKGASASSDPLASTTWEEVSPKYTLITPSQCKSLWKQFKAETEFAITQA 666
Query: 675 ISMQEAHRRSNNWLPPAWTVLLLAILGYNEFIFLLRNPLYLLGLFVAFVVSYAAWLQYDI 734
+S Q+AH+R N LPP W ++ +A+LG+NE + LLRNP+YL LFV +++ A +Q DI
Sbjct: 667 VSTQQAHKRGNGRLPPPWAMVAIAVLGFNEIMTLLRNPIYLFLLFVGYLLVKALAVQLDI 726
Query: 735 TAYFRHGTLSGLLTITSGFLPTIMDIITAV 764
F++G + G++++T+ +PT+ +I+ V
Sbjct: 727 NREFQNGVVPGIISVTAKLIPTLQNILNKV 756
>Os01g0575000 Root hair defective 3 GTP-binding family protein
Length = 806
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/748 (58%), Positives = 563/748 (75%), Gaps = 3/748 (0%)
Query: 15 CHAAQVVGADGEMDXXXXXXXXXXXXXXXXXXSYAVVSIVGPQGSGKSTLLNQLFGTSFT 74
C + Q++ DG + SYAVVSI+GPQ SGKSTLLN LF T+F
Sbjct: 4 CFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRTNFR 63
Query: 75 EMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSD 134
EMDA KGRSQTTKGIW+AKA IEP T+VMDLEGTDGRERGEDDTAFEKQSALFALAVSD
Sbjct: 64 EMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSD 123
Query: 135 IVMINLWCHDIGREHAANRPLLKTIFEVLMRLFSPRKTTLLLVIRDKTKTPLEYLTQALK 194
IV+IN+WCHDIGRE AAN+PLLKT+F+V+MRLFSPRKTTLL VIRDK+KTPLE L L+
Sbjct: 124 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILR 183
Query: 195 EDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKENLFKEQVGQLRQRFIHSIAPG 254
EDIQKIW+ V KP +KE LSEFFNVEV ALSSYEEKE LFKEQV LR RF SIAPG
Sbjct: 184 EDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSIAPG 243
Query: 255 GLAADRRGVIPASGFCLSALQIWKVIRENKDLNLPAHKIMVATVRCEEIADEKLRSFISD 314
GLA DRRGV+PASGF S+ Q WKVI+ENKDL+LPAHK+MVATVRCEEI +EK+ SF +D
Sbjct: 244 GLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASFTAD 303
Query: 315 KGWLELETAANSGLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRTAKRQQLESEILKHT 374
+ W + E A VPGFGKK++ +LD LSEYD EA+YFDE VRT+KR QLES++L+
Sbjct: 304 EEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLLQLV 363
Query: 375 YDAFKKMLEHLHHVVLNKFKSDLEQSLRSGEGFAASARYCVQSSMAEFDAGLRDALVKHA 434
A++ +L+HL L FK ++SL EGFA +AR C + + +FD G DA ++
Sbjct: 364 NPAYQNILDHLRTRTLEVFKESFDKSLEK-EGFAVAARDCTKVFLEKFDKGSEDAAIQQV 422
Query: 435 EWDTTKVRSKLEQHIEAHATSVRGTKLAELKANYEKKLLDTLAGPVQSILETGEKDSWAC 494
+WD +K++ KL++ IEAH SVR KL+EL + YE +L LA PV+++L++ +++W
Sbjct: 423 KWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETWPA 482
Query: 495 IRRLYRHATESAILAFSASLSEFELDQTTIRKMVMELREHARSIVEEKAREEAGNVLMRM 554
IR+L + T+SA+ F ++++ FELD+ T ++++ +L H +S+VE KA+EEA VL+RM
Sbjct: 483 IRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLIRM 542
Query: 555 KERFSTVLSRDKDSMPRTWKGNEDIRAITREARLAALRLMSVMAAVRLDDKPDKIDRALT 614
K+RFST+ SRD DSMPR W G EDI+AIT+ AR A+++L+S MAA+RLD+ D I+ L+
Sbjct: 543 KDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENTLS 602
Query: 615 TALLDGG-PLSQKRSIEFTSDPLASSTWEEVSEKNTLITPVQCKSIWRQFNAETEYAVAQ 673
AL+D P + RSI+ + DPLASS+WE V E+ TLITPVQCKS+WRQF AETEY V Q
Sbjct: 603 LALVDTARPGTTDRSIQ-SFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVTQ 661
Query: 674 AISMQEAHRRSNNWLPPAWTVLLLAILGYNEFIFLLRNPLYLLGLFVAFVVSYAAWLQYD 733
AI+ QEA++R+NNWLPP W + +AILG+NEF+ LL+NPLYL +FV F+V A W+Q D
Sbjct: 662 AIAAQEANKRNNNWLPPPWALAAMAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQLD 721
Query: 734 ITAYFRHGTLSGLLTITSGFLPTIMDII 761
I F++G L +L++++ F+PTIM+I+
Sbjct: 722 IAKEFQNGFLPAVLSLSTKFVPTIMNIL 749
>AK109999
Length = 855
Score = 260 bits (664), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 198/702 (28%), Positives = 333/702 (47%), Gaps = 44/702 (6%)
Query: 48 YAVVSIVGPQGSGKSTLLNQLFGTSFTEMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLE 107
Y + +++G Q +GKSTLLN+LFGT+F M R QTTKGIW+ K G++ +VMD+E
Sbjct: 119 YDLCAVLGSQSTGKSTLLNKLFGTNFDVMSE-TARQQTTKGIWMCK--GLKMNVLVMDVE 175
Query: 108 GTDGRERGEDDTAFEKQSALFALAVSDIVMINLWCHDIGREHAANRPLLKTIFEVLMRLF 167
GTDGRERGED FE++SALF++A ++++++NLW H +G AN LLKT+FEV + LF
Sbjct: 176 GTDGRERGEDQD-FERKSALFSMASAEVLIVNLWEHQVGLYQGANMGLLKTVFEVNLGLF 234
Query: 168 ---------SPRKTTLLLVIRDKTK-TPLEYLTQALKEDIQKIWNAVRKPEVYKEAALSE 217
+ KT LL VIRD TPLE L+ + D+ KIW ++ KPE + + +++
Sbjct: 235 QASKAKTAGAKDKTLLLFVIRDHIGVTPLENLSATIMADLTKIWLSLAKPEGLEASQITD 294
Query: 218 FFNVEVTALSSYEEKENLFKEQVGQLRQRFIHSIAPGGL-AADRRGVIPASGFCLSALQI 276
FF+ T L + F + V LR RF+ P + + IPA G I
Sbjct: 295 FFDFMFTTLPHKVLQPAEFDKAVDALRTRFVDPKDPNFVFKTEYHKRIPADGLPHYLESI 354
Query: 277 WKVIRENKDLNLPAHKIMVATVRCEEIADEKLRSFISDKGWLELETAANSGLVPGFGKKL 336
W+ + NKDL+LP + ++A RC+EIA+ F + S ++ G +
Sbjct: 355 WEQVMTNKDLDLPTQQELLAQFRCDEIANAAFALFATSIKDFRKHIEGGS-ILDTLGADM 413
Query: 337 NAILDFYLSEYDTEAMYFDEDVRTAKRQQLESEILKHTYDAFKKMLEHLHHVVLNKFKSD 396
L+ +D +A + ++V KR L ++ F L++LH +L FK
Sbjct: 414 ALHRSTALASFDRDASRYHQEVYKRKRVDLLEKLNSSLSPFFLGQLKNLHRHMLQNFKRS 473
Query: 397 LEQSLRS--GEGFAASARYCVQSSMAEFDAGLRDALVKHAEWDTTKVRSKLEQHIEAHAT 454
+ +R+ F ++++A+F A L+ +W + ++L+ I+A +
Sbjct: 474 VLDRMRTEPNYDFGLVVSSEKRTALAKFSAAANAVLLADTDWAVDEEVAQLDAEIQAISD 533
Query: 455 SVRGTKLAELKANYEKKLLDTLAGPVQSILETGEKDSWACIRRLYRHATESAILAFSASL 514
++R + ++ A E+ + PV+ L + W + +R E A +
Sbjct: 534 TMRVEETKKMVAQIERTFKKNIGEPVEMALNAPGPEMWDQVLVAFRRTLEQAEATYVRKA 593
Query: 515 SEFELDQTTIRKMVMELREHARSIVEEKAREEAGNVLM--RMKERFSTVLSRDKDSMPRT 572
F + + LR + + K E+ + ++ R++ F D PR
Sbjct: 594 KSFNCTEEENTAALAALRRKSWLSLRAKVDEQTADSVLAARLRGCFEDRFRYDDAGTPRV 653
Query: 573 WKGNEDIRAITREARLAALRLMSVMAAVRLDDKPDKIDRALTTALLDG---GPLSQKRSI 629
WK +D+ R+AR L L+ + A R++ K + L + D G + +
Sbjct: 654 WKPEDDMDGAFRKARDETLALIPLYA--RIEPKDPAVAVQLASTEDDAELQGAVDRGEGE 711
Query: 630 EFTSDPLASSTWEEVSEKNTLITPVQCKSIWRQFNAETEYAVAQAISMQEAHRRSNNWLP 689
EF + ++ + + + I +F E A A+ + EA R + + +
Sbjct: 712 EF-----------DFAQTLVVFSEARKAEIGTRFRKE-----ADALYV-EAKRSTVSSIA 754
Query: 690 --PAWTVLLLAILGYNEFIFLLRNPLYLLGLFVAFVVSYAAW 729
P W +LA+LG+NEF+ ++ +P+Y L V +Y W
Sbjct: 755 QVPLWMYGVLAVLGWNEFMAVISSPVYFAFLLVLIASAYVVW 796
>AK110060
Length = 1127
Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 207/341 (60%), Gaps = 29/341 (8%)
Query: 47 SYAVVSIVGPQGSGKSTLLNQLFGTSFTEMDALKGRSQTTKGIWIAKAVGIEPFTVVMDL 106
+Y+VV I+G Q +GKSTLLN LFGT F EMD+ +GRSQTTKG+W+ V+MDL
Sbjct: 193 NYSVVGIMGCQSTGKSTLLNLLFGTRFQEMDSSQGRSQTTKGVWMDSGCKKRDL-VIMDL 251
Query: 107 EGTDGRERGEDDTAFEKQSALFALAVSDIVMINLWCHDIGREHAANRPLLKTIFEVLMRL 166
EGTD ERGED T FE+Q++L+ALAV+++++IN+W HDIGR A+N +LKT+FEV ++L
Sbjct: 252 EGTDSGERGEDRTTFERQTSLYALAVAEVLLINMWEHDIGRYTASNYGILKTVFEVNLQL 311
Query: 167 ---------FSPRKTTLLLVIRD--KTKTPLEYLTQALKEDIQKIWNAVRKPEVYKEAAL 215
+ +T L+ VIRD + +TP+E L + L +++ KIW +RKPE +K +
Sbjct: 312 EVSQQALFGEATNRTVLMFVIRDHIEEETPMEQLKKKLHKEVDKIWGEIRKPERFKNTQV 371
Query: 216 SEFFNVEVTALSSYEEKENLFKEQVGQLRQRFIHSIAPG------GLAADRRGVIPASGF 269
+E F ++ AL + +++LFK++V LR++F P G + R +PA GF
Sbjct: 372 AEMFELKFCALPHMKLQKDLFKQRVNALREQF---TTPSDSEYLFGGPRNGRKAVPADGF 428
Query: 270 CLSALQIWKVIRENKDLNLPAHKIMVATVRCEEIADEKLRSFISD---KGWLELETAANS 326
L Q W IR NK+LNLP K M+AT RC+EI + S +D G EL+ A +
Sbjct: 429 GLYMEQCWATIRSNKELNLPTQKEMLATFRCDEI----IHSLYADTFAPGMAELKELAAT 484
Query: 327 GLVPG-FGKKLNAILDFYLSEYDTEAMYFDEDVRTAKRQQL 366
LV F +L L++Y E ++ + AK+++L
Sbjct: 485 ELVADQFADTAEPLLRAILADYSDETKHYHAAIVAAKKREL 525
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,105,458
Number of extensions: 941907
Number of successful extensions: 3238
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3224
Number of HSP's successfully gapped: 5
Length of query: 823
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 714
Effective length of database: 11,344,475
Effective search space: 8099955150
Effective search space used: 8099955150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)