Os01g0575000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Root hair defective 3 GTP-binding family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0575000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Root hair defective 3 GTP-binding family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.65 | 0.138 | 11.9 | 0.644 | 0.357 | -0.434 | -0.12 | 0.46 | 0.472 | 2.53 | 23 | 59 | -- | -- |
| 8.71 | 0.139 | 11.9 | 0.568 | 0.36 | -0.41 | -0.223 | -- | 0.451 | 2.8 | 22.95 | 57 | -- | -- |
| 8.69 | 0.137 | 11.9 | 0.668 | 0.356 | -0.44 | -- | 0.594 | 0.479 | 2.48 | 23 | 60 | -- | -- |
| 8.88 | 0.14 | 11.9 | 0.571 | 0.365 | -0.397 | -- | -- | 0.451 | 2.74 | 22.9 | 68 | -- | -- |
| 13.3 | 0.17 | 11.9 | 0.798 | -- | -0.816 | -- | 1.06 | 0.545 | -- | 23.43 | 28 | -- | -- |
| 11.34 | 0.158 | 12 | 0.494 | 0.521 | -- | -0.107 | -- | 0.391 | 2.73 | -- | -- | -- | -- |
| 11.38 | 0.158 | 12 | 0.497 | 0.52 | -- | -- | -- | 0.392 | 2.72 | -- | -- | -- | -- |
| 13.76 | 0.174 | 11.9 | 0.64 | -- | -0.731 | -- | -- | 0.503 | -- | 23.2 | 47 | -- | -- |
| 17.01 | 0.193 | 12 | -- | 0.441 | -0.229 | -- | -- | 0.366 | 2.74 | 22.9 | 68 | -- | -- |
| 27.14 | 0.243 | 11.9 | 0.519 | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
| 17.89 | 0.198 | 12 | -- | 0.53 | -- | -- | -- | 0.337 | 2.73 | -- | -- | -- | -- |
| 23.88 | 0.228 | 11.9 | -- | -- | -0.652 | -- | -- | 0.398 | -- | 24.45 | 6 | -- | -- |
| 34.24 | 0.273 | 12 | -- | -- | -- | -- | -- | 0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 7 | 8.47 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 43 | 8.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 51 | 8.68 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 68 | 8.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 78 | 8.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 83 | 8.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 102 | 8.80 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 117 | 8.84 | humidity | 80 | 10 | > th | dose dependent | sin | 22 | NA |
| 125 | 8.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 127 | 8.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 129 | 8.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 132 | 8.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 136 | 8.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 142 | 8.88 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 146 | 8.88 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 147 | 8.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 157 | 8.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 164 | 8.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 202 | 8.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 203 | 8.89 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 205 | 8.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 215 | 8.90 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 230 | 8.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 243 | 8.91 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 245 | 8.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 280 | 8.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 309 | 8.92 | humidity | 60 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 335 | 8.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 385 | 8.95 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 387 | 8.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 394 | 8.96 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 428 | 8.96 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 434 | 8.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 462 | 8.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 464 | 8.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 517 | 8.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 577 | 9.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 582 | 9.01 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 587 | 9.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 600 | 9.01 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 606 | 9.02 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 659 | 9.04 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 660 | 9.04 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 665 | 9.04 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 687 | 9.04 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 691 | 9.05 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 697 | 9.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 711 | 9.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 712 | 9.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 731 | 9.06 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 741 | 9.07 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 781 | 9.07 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 824 | 9.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 845 | 9.09 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 848 | 9.09 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 857 | 9.09 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 23 |
| 881 | 9.10 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 899 | 9.10 | humidity | 80 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 935 | 9.11 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 22 |
| 968 | 9.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |