BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0575000 Os01g0575000|AK070726
(806 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0575000 Root hair defective 3 GTP-binding family protein 1581 0.0
Os12g0604600 Similar to GTP-binding protein-like 984 0.0
Os11g0582300 Similar to GTP-binding protein-like 903 0.0
AK109999 281 2e-75
AK110060 248 1e-65
>Os01g0575000 Root hair defective 3 GTP-binding family protein
Length = 806
Score = 1581 bits (4094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/783 (98%), Positives = 770/783 (98%)
Query: 1 MDACFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRT 60
MDACFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRT
Sbjct: 1 MDACFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRT 60
Query: 61 NFREMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALA 120
NFREMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALA
Sbjct: 61 NFREMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALA 120
Query: 121 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEP 180
VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEP
Sbjct: 121 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEP 180
Query: 181 ILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSI 240
ILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSI
Sbjct: 181 ILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSI 240
Query: 241 APGGLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASF 300
APGGLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASF
Sbjct: 241 APGGLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASF 300
Query: 301 TADEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLL 360
TADEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLL
Sbjct: 301 TADEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLL 360
Query: 361 QLVNPAYQNILDHLRTRTLEVFKESFDKSLEKEGFAVAARDCTKVFLEKFDKGSEDAAIQ 420
QLVNPAYQNILDHLRTRTLEVFKESFDKSLEKEGFAVAARDCTKVFLEKFDKGSEDAAIQ
Sbjct: 361 QLVNPAYQNILDHLRTRTLEVFKESFDKSLEKEGFAVAARDCTKVFLEKFDKGSEDAAIQ 420
Query: 421 QVKWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETW 480
QVKWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETW
Sbjct: 421 QVKWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETW 480
Query: 481 PAIRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLI 540
PAIRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLI
Sbjct: 481 PAIRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLI 540
Query: 541 RMKDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENT 600
RMKDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENT
Sbjct: 541 RMKDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENT 600
Query: 601 LSLALVDTARPGTTDRSIQSFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVT 660
LSLALVDTARPGTTDRSIQSFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVT
Sbjct: 601 LSLALVDTARPGTTDRSIQSFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVT 660
Query: 661 QAIAAQEANKRXXXXXXXXXXXXXMAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQL 720
QAIAAQEANKR MAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQL
Sbjct: 661 QAIAAQEANKRNNNWLPPPWALAAMAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQL 720
Query: 721 DIAKEFQNGFLPAVLSLSTKFVPTIMNILKRLADEGQRPAAPERQREMELQPKSTRNGSH 780
DIAKEFQNGFLPAVLSLSTKFVPTIMNILKRLADEGQRPAAPERQREMELQPKSTRNGSH
Sbjct: 721 DIAKEFQNGFLPAVLSLSTKFVPTIMNILKRLADEGQRPAAPERQREMELQPKSTRNGSH 780
Query: 781 SNV 783
SNV
Sbjct: 781 SNV 783
>Os12g0604600 Similar to GTP-binding protein-like
Length = 854
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/754 (62%), Positives = 585/754 (77%), Gaps = 1/754 (0%)
Query: 3 ACFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRTNF 62
A + QLIDG+G F E FM + CGLSYAVVSIMGPQSSGKSTLLN LF TNF
Sbjct: 6 AAEAVQLIDGEGEFAADSAERFMAAAGVAGCGLSYAVVSIMGPQSSGKSTLLNQLFGTNF 65
Query: 63 REMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVS 122
REMDAF+GRSQTTKGIW+A+ +EPCT+VMDLEGTDGRERGEDDTAFEKQS+LFALA+S
Sbjct: 66 REMDAFRGRSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLFALAIS 125
Query: 123 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPIL 182
DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDK++TPLE+LEP+L
Sbjct: 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEHLEPVL 185
Query: 183 REDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSIAP 242
REDIQKIW+ V KP AHK+TP+SEFFNV+V AL S+EEKEE F+EQV LR RF SIAP
Sbjct: 186 REDIQKIWNSVAKPEAHKDTPISEFFNVQVTALPSFEEKEEQFREQVQQLRQRFSNSIAP 245
Query: 243 GGLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASFTA 302
GGLAGDRRGVVPASGF FSSQQ WKVI+ENKDLDLPAHKVMVATVRC+EI +EK + T+
Sbjct: 246 GGLAGDRRGVVPASGFLFSSQQIWKVIRENKDLDLPAHKVMVATVRCDEIAHEKFSCLTS 305
Query: 303 DEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLLQL 362
D EW + E VQ VPGFGKK+ ++D + EYD EAIYFDE VRT+KR L+S++L L
Sbjct: 306 DAEWMELESDVQSGPVPGFGKKLGYIVDVHMQEYDKEAIYFDEAVRTAKRQLLKSRVLNL 365
Query: 363 VNPAYQNILDHLRTRTLEVFKESFDKSLEK-EGFAVAARDCTKVFLEKFDKGSEDAAIQQ 421
V PA+Q +L HLRTR LE +K + +LE +GFA A RD T+ L +FD+G DA I+Q
Sbjct: 366 VQPAFQKMLAHLRTRALEKYKTELNLTLESGKGFAAAVRDTTESNLNEFDQGCADAVIEQ 425
Query: 422 VKWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETWP 481
WD SKI +K++RD+E H S+R KLSEL + + +L KAL EPVE+L D+A TW
Sbjct: 426 ADWDYSKILEKVRRDVEDHTLSIREGKLSELTNHAKEKLRKALVEPVESLFDAAGPSTWA 485
Query: 482 AIRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLIR 541
+IR L +RET++ + F+ +A FE++ T + ++SKL + +S+VE+KAKEEA +VLI
Sbjct: 486 SIRNLFKRETEAILPEFQKNLAGFEMESATSEGMVSKLRDYARSIVENKAKEEAGKVLIH 545
Query: 542 MKDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENTL 601
MK+RF+T+FS D DS+PRVWTGKED++AI K ARSA++KLLS +AAIR DE D IE L
Sbjct: 546 MKERFTTVFSHDKDSIPRVWTGKEDVRAIAKDARSAALKLLSVLAAIRWDEKPDKIEKIL 605
Query: 602 SLALVDTARPGTTDRSIQSFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVTQ 661
+ L+D + + + S DPLAS++WE V + TLITP QCKSLW+QFKAETE+ +TQ
Sbjct: 606 TSTLLDGSVTPKSKGASASSDPLASTTWEEVSPKYTLITPSQCKSLWKQFKAETEFAITQ 665
Query: 662 AIAAQEANKRXXXXXXXXXXXXXMAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQLD 721
A++ Q+A+KR +A+LGFNE MTLL+NP+YL ++FV +L+ KA+ VQLD
Sbjct: 666 AVSTQQAHKRGNGRLPPPWAMVAIAVLGFNEIMTLLRNPIYLFLLFVGYLLVKALAVQLD 725
Query: 722 IAKEFQNGFLPAVLSLSTKFVPTIMNILKRLADE 755
I +EFQNG +P ++S++ K +PT+ NIL ++A E
Sbjct: 726 INREFQNGVVPGIISVTAKLIPTLQNILNKVATE 759
>Os11g0582300 Similar to GTP-binding protein-like
Length = 823
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/748 (58%), Positives = 559/748 (74%), Gaps = 3/748 (0%)
Query: 4 CFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRTNFR 63
C + Q++ DG + + F + GLSYAVVSI+GPQ SGKSTLLN LF T+F
Sbjct: 15 CHAAQVVGADGEMDGEAMARFAAGAGLLGRGLSYAVVSIVGPQGSGKSTLLNQLFGTSFT 74
Query: 64 EMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSD 123
EMDA KGRSQTTKGIW+AKA IEP T+VMDLEGTDGRERGEDDTAFEKQSALFALAVSD
Sbjct: 75 EMDALKGRSQTTKGIWIAKAVGIEPFTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSD 134
Query: 124 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILR 183
IV+IN+WCHDIGRE AAN+PLLKT+F+V+MRLFSPRKTTLL VIRDK+KTPLE L L+
Sbjct: 135 IVMINLWCHDIGREHAANRPLLKTIFEVLMRLFSPRKTTLLLVIRDKTKTPLEYLTQALK 194
Query: 184 EDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVASLRDRFQQSIAPG 243
EDIQKIW+ V KP +KE LSEFFNVEV ALSSYEEKE LFKEQV LR RF SIAPG
Sbjct: 195 EDIQKIWNAVRKPEVYKEAALSEFFNVEVTALSSYEEKENLFKEQVGQLRQRFIHSIAPG 254
Query: 244 GLAGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCEEIGNEKIASFTAD 303
GLA DRRGV+PASGF S+ Q WKVI+ENKDL+LPAHK+MVATVRCEEI +EK+ SF +D
Sbjct: 255 GLAADRRGVIPASGFCLSALQIWKVIRENKDLNLPAHKIMVATVRCEEIADEKLRSFISD 314
Query: 304 EEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRTSKRHQLESKLLQLV 363
+ W + E A VPGFGKK++ +LD LSEYD EA+YFDE VRT+KR QLES++L+
Sbjct: 315 KGWLELETAANSGLVPGFGKKLNAILDFYLSEYDTEAMYFDEDVRTAKRQQLESEILKHT 374
Query: 364 NPAYQNILDHLRTRTLEVFKESFDKSLEK-EGFAVAARDCTKVFLEKFDKGSEDAAIQQV 422
A++ +L+HL L FK ++SL EGFA +AR C + + +FD G DA ++
Sbjct: 375 YDAFKKMLEHLHHVVLNKFKSDLEQSLRSGEGFAASARYCVQSSMAEFDAGLRDALVKHA 434
Query: 423 KWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAEPVEALLDSASEETWPA 482
+WD +K++ KL++ IEAH SVR KL+EL + YE +L LA PV+++L++ +++W
Sbjct: 435 EWDTTKVRSKLEQHIEAHATSVRGTKLAELKANYEKKLLDTLAGPVQSILETGEKDSWAC 494
Query: 483 IRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSVVESKAKEEAARVLIRM 542
IR+L + T+SA+ F ++++ FELD+ T ++++ +L H +S+VE KA+EEA VL+RM
Sbjct: 495 IRRLYRHATESAILAFSASLSEFELDQTTIRKMVMELREHARSIVEEKAREEAGNVLMRM 554
Query: 543 KDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLSTMAAIRLDEDGDNIENTLS 602
K+RFST+ SRD DSMPR W G EDI+AIT+ AR A+++L+S MAA+RLD+ D I+ L+
Sbjct: 555 KERFSTVLSRDKDSMPRTWKGNEDIRAITREARLAALRLMSVMAAVRLDDKPDKIDRALT 614
Query: 603 LALVDTARPGTTDRSIQ-SFDPLASSSWERVPEEKTLITPVQCKSLWRQFKAETEYTVTQ 661
AL+D P + RSI+ + DPLASS+WE V E+ TLITPVQCKS+WRQF AETEY V Q
Sbjct: 615 TALLDGG-PLSQKRSIEFTSDPLASSTWEEVSEKNTLITPVQCKSIWRQFNAETEYAVAQ 673
Query: 662 AIAAQEANKRXXXXXXXXXXXXXMAILGFNEFMTLLKNPLYLGVIFVVFLVGKAMWVQLD 721
AI+ QEA++R +AILG+NEF+ LL+NPLYL +FV F+V A W+Q D
Sbjct: 674 AISMQEAHRRSNNWLPPAWTVLLLAILGYNEFIFLLRNPLYLLGLFVAFVVSYAAWLQYD 733
Query: 722 IAKEFQNGFLPAVLSLSTKFVPTIMNIL 749
I F++G L +L++++ F+PTIM+I+
Sbjct: 734 ITAYFRHGTLSGLLTITSGFLPTIMDII 761
>AK109999
Length = 855
Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 208/737 (28%), Positives = 342/737 (46%), Gaps = 45/737 (6%)
Query: 2 DACFSTQLIDGDGVFNVSGLENFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRTN 61
+A QLID + FN + + + + + G Y + +++G QS+GKSTLLN LF TN
Sbjct: 84 NAAGRMQLIDENQKFNSAHFGPSLDQWGLADAGFGYDLCAVLGSQSTGKSTLLNKLFGTN 143
Query: 62 FREMDAFKGRSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 121
F M R QTTKGIWM K + LVMD+EGTDGRERGED FE++SALF++A
Sbjct: 144 FDVMSE-TARQQTTKGIWMCKGLKMN--VLVMDVEGTDGRERGEDQD-FERKSALFSMAS 199
Query: 122 SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF---------SPRKTTLLFVIRDK-S 171
++++++N+W H +G Q AN LLKTVF+V + LF + KT LLFVIRD
Sbjct: 200 AEVLIVNLWEHQVGLYQGANMGLLKTVFEVNLGLFQASKAKTAGAKDKTLLLFVIRDHIG 259
Query: 172 KTPLENLEPILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFKEQVAS 231
TPLENL + D+ KIW + KP + + +++FF+ L + F + V +
Sbjct: 260 VTPLENLSATIMADLTKIWLSLAKPEGLEASQITDFFDFMFTTLPHKVLQPAEFDKAVDA 319
Query: 232 LRDRFQQSIAPGGL-AGDRRGVVPASGFSFSSQQFWKVIKENKDLDLPAHKVMVATVRCE 290
LR RF P + + +PA G + W+ + NKDLDLP + ++A RC+
Sbjct: 320 LRTRFVDPKDPNFVFKTEYHKRIPADGLPHYLESIWEQVMTNKDLDLPTQQELLAQFRCD 379
Query: 291 EIGNEKIASF-TADEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYFDEGVRT 349
EI N A F T+ +++++ E + G ++ L+ +D +A + + V
Sbjct: 380 EIANAAFALFATSIKDFRKHIEG--GSILDTLGADMALHRSTALASFDRDASRYHQEVYK 437
Query: 350 SKRHQLESKLLQLVNPAYQNILDHLRTRTLEVFKESFDKSLEKE---GFAVAARDCTKVF 406
KR L KL ++P + L +L L+ FK S + E F + +
Sbjct: 438 RKRVDLLEKLNSSLSPFFLGQLKNLHRHMLQNFKRSVLDRMRTEPNYDFGLVVSSEKRTA 497
Query: 407 LEKFDKGSEDAAIQQVKWDPSKIKDKLKRDIEAHVASVRAKKLSELCSKYEGQLTKALAE 466
L KF + + W + +L +I+A ++R ++ ++ ++ E K + E
Sbjct: 498 LAKFSAAANAVLLADTDWAVDEEVAQLDAEIQAISDTMRVEETKKMVAQIERTFKKNIGE 557
Query: 467 PVEALLDSASEETWPAIRKLLQRETKSAVSGFESAMASFELDEVTQKELLSKLESHGKSV 526
PVE L++ E W + +R + A + + SF E L+ L
Sbjct: 558 PVEMALNAPGPEMWDQVLVAFRRTLEQAEATYVRKAKSFNCTEEENTAALAALRRKSWLS 617
Query: 527 VESKAKEEAARVLI--RMKDRFSTLFSRDADSMPRVWTGKEDIKAITKTARSASMKLLST 584
+ +K E+ A ++ R++ F F D PRVW ++D+ + AR ++ L+
Sbjct: 618 LRAKVDEQTADSVLAARLRGCFEDRFRYDDAGTPRVWKPEDDMDGAFRKARDETLALIPL 677
Query: 585 MAAIRLDEDGDNIENTLSLALVDTARPGTTDRS-IQSFDPLASSSWERVPEEKTLITPVQ 643
A R++ + L+ D G DR + FD + + + +
Sbjct: 678 YA--RIEPKDPAVAVQLASTEDDAELQGAVDRGEGEEFD---------FAQTLVVFSEAR 726
Query: 644 CKSLWRQFKAETEYTVTQAIAAQEANKRXXXXXXXXX---XXXXMAILGFNEFMTLLKNP 700
+ +F+ E + +A KR +A+LG+NEFM ++ +P
Sbjct: 727 KAEIGTRFRKEADALYVEA-------KRSTVSSIAQVPLWMYGVLAVLGWNEFMAVISSP 779
Query: 701 LYLGVIFVVFLVGKAMW 717
+Y + V+ +W
Sbjct: 780 VYFAFLLVLIASAYVVW 796
>AK110060
Length = 1127
Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 220/376 (58%), Gaps = 22/376 (5%)
Query: 2 DACFSTQLIDGDGVFNVSGLE-NFMKEVKMGECGLSYAVVSIMGPQSSGKSTLLNHLFRT 60
D +IDG G F+ + ++ ++ +Y+VV IMG QS+GKSTLLN LF T
Sbjct: 158 DGNVFVHVIDGTGNFSCTPVDLTYLVLHAQQSRNANYSVVGIMGCQSTGKSTLLNLLFGT 217
Query: 61 NFREMDAFKGRSQTTKGIWM---AKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALF 117
F+EMD+ +GRSQTTKG+WM K ++ ++MDLEGTD ERGED T FE+Q++L+
Sbjct: 218 RFQEMDSSQGRSQTTKGVWMDSGCKKRDL----VIMDLEGTDSGERGEDRTTFERQTSLY 273
Query: 118 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL---------FSPRKTTLLFVIR 168
ALAV++++LINMW HDIGR A+N +LKTVF+V ++L + +T L+FVIR
Sbjct: 274 ALAVAEVLLINMWEHDIGRYTASNYGILKTVFEVNLQLEVSQQALFGEATNRTVLMFVIR 333
Query: 169 D--KSKTPLENLEPILREDIQKIWDGVPKPHAHKETPLSEFFNVEVVALSSYEEKEELFK 226
D + +TP+E L+ L +++ KIW + KP K T ++E F ++ AL + +++LFK
Sbjct: 334 DHIEEETPMEQLKKKLHKEVDKIWGEIRKPERFKNTQVAEMFELKFCALPHMKLQKDLFK 393
Query: 227 EQVASLRDRFQQ-SIAPGGLAGDRRG--VVPASGFSFSSQQFWKVIKENKDLDLPAHKVM 283
++V +LR++F S + G R G VPA GF +Q W I+ NK+L+LP K M
Sbjct: 394 QRVNALREQFTTPSDSEYLFGGPRNGRKAVPADGFGLYMEQCWATIRSNKELNLPTQKEM 453
Query: 284 VATVRCEEIGNEKIASFTADEEWQQFEEAVQHDYVPGFGKKISNLLDRCLSEYDMEAIYF 343
+AT RC+EI + A A + E A F LL L++Y E ++
Sbjct: 454 LATFRCDEIIHSLYADTFAPGMAELKELAATELVADQFADTAEPLLRAILADYSDETKHY 513
Query: 344 DEGVRTSKRHQLESKL 359
+ +K+ +L K+
Sbjct: 514 HAAIVAAKKRELLRKM 529
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,928,841
Number of extensions: 947354
Number of successful extensions: 3186
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3171
Number of HSP's successfully gapped: 5
Length of query: 806
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 697
Effective length of database: 11,344,475
Effective search space: 7907099075
Effective search space used: 7907099075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)