BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0582100 Os11g0582100|AK068669
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0582100  Zinc finger, RING-type domain containing protein    270   5e-73
Os08g0487500  Zinc finger, RING-type domain containing protein     64   9e-11

>Os11g0582100 Zinc finger, RING-type domain containing protein
          Length = 205

 Score =  270 bits (690), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 153/205 (74%)

Query: 1   MLPGVELARRRRVXXXXXXXXXXXXXXXXXXXXYNYFHQQHHRQXXXXXXXXXXXXXXXX 60
           MLPGVELARRRRV                    YNYFHQQHHRQ                
Sbjct: 1   MLPGVELARRRRVHYHGDGAAAGAGFGEHHHGHYNYFHQQHHRQAVASAEAGAGAGGEVS 60

Query: 61  XXXXXRIRLEEKLRGAAAAPSSSLSRWGRRFRERDGSTTSRXXXXXXXXXXXLPTEPRPT 120
                RIRLEEKLRGAAAAPSSSLSRWGRRFRERDGSTTSR           LPTEPRPT
Sbjct: 61  PAVAARIRLEEKLRGAAAAPSSSLSRWGRRFRERDGSTTSRQQNNQQEQQIQLPTEPRPT 120

Query: 121 PKHSMTMLEAPSTRKAPRREMRRTLSKADLCAVCLDEVRERHQRVTRLPCSHKYHSECVL 180
           PKHSMTMLEAPSTRKAPRREMRRTLSKADLCAVCLDEVRERHQRVTRLPCSHKYHSECVL
Sbjct: 121 PKHSMTMLEAPSTRKAPRREMRRTLSKADLCAVCLDEVRERHQRVTRLPCSHKYHSECVL 180

Query: 181 PWLAIQPDCPCCRTQVPSVDSLFVA 205
           PWLAIQPDCPCCRTQVPSVDSLFVA
Sbjct: 181 PWLAIQPDCPCCRTQVPSVDSLFVA 205



>Os08g0487500 Zinc finger, RING-type domain containing protein
          Length = 271

 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 151 CAVCLDEVRERHQRVTRLPCSHKYHSECVLPWLAIQPDCPCCRTQVPSVD 200
           CAVC D V    +RV RLPCSH YH EC++PWL ++  CP CR ++P+ D
Sbjct: 209 CAVCRDGVA-AGERVKRLPCSHGYHEECIMPWLDVRNSCPLCRFELPTDD 257



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.133    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,006,294
Number of extensions: 218627
Number of successful extensions: 1281
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 4
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)