Os11g0582100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0582100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	12.1	(0.0248)	R²	:	0.456
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	1.55	(0.0825)	R²_dC	:	0.769	R²_C	:	0.0759
β₃	:	1.33	(0.107)	R²_dE	:	0.332	R²_E	:	-0.356
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.328	(0.0522)	R²_dN8	:	0.0611	R²_N8	:	0.0275
σ	:	0.465
deviance	:	99.66
__

_____

C
peak time of C	:	21.2
E
wheather	:	humidity
threshold	:	73.37
memory length	:	819
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
98.63	0.467	12.1	0.197	1.55	1.34	0.0408	-0.463	0.36	21.3	73.99	835	--	--
98.81	0.463	12.1	0.167	1.57	1.36	0.241	--	0.348	21.2	73.54	819	--	--
98.49	0.462	12.1	0.202	1.57	1.37	--	-0.542	0.358	21.2	73.97	818	--	--
99.02	0.463	12.1	0.158	1.57	1.35	--	--	0.347	21.2	73.53	819	--	--
143.2	0.56	12.1	0.0679	--	0.57	--	-0.463	0.294	--	73.97	818	--	--
132.54	0.54	12.1	0.00198	0.867	--	0.0467	--	0.278	21.7	--	--	--	--
132.55	0.539	12.1	0.000141	0.866	--	--	--	0.278	21.7	--	--	--	--
144.44	0.562	12.1	0.0524	--	0.567	--	--	0.289	--	73.97	818	--	--
99.66	0.465	12.1	--	1.55	1.33	--	--	0.328	21.2	73.37	819	--	--
177.17	0.622	12.1	0.0082	--	--	--	--	0.277	--	--	--	--	--
132.55	0.539	12.1	--	0.866	--	--	--	0.278	21.7	--	--	--	--
144.52	0.562	12.1	--	--	0.566	--	--	0.283	--	73.97	818	--	--
177.18	0.621	12.1	--	--	--	--	--	0.276	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	93.97	humidity	70	10	> th	dose dependent	rect.	6	14
2	94.61	humidity	80	1440	< th	dose independent	rect.	8	7
6	95.35	humidity	80	1440	> th	dose independent	rect.	8	7
26	96.47	humidity	70	1440	> th	dose dependent	rect.	9	5
30	96.63	humidity	70	90	> th	dose dependent	rect.	5	22
53	97.73	humidity	80	1440	< th	dose independent	sin	2	NA
69	98.07	humidity	70	720	> th	dose dependent	rect.	9	14
71	98.22	humidity	80	1440	> th	dose independent	sin	2	NA
120	99.17	humidity	80	720	< th	dose independent	rect.	8	13
126	99.23	humidity	80	10	> th	dose independent	rect.	6	14
135	99.35	humidity	80	720	> th	dose independent	rect.	8	14
160	99.75	humidity	70	10	> th	dose dependent	sin	21	NA
167	99.85	humidity	70	720	> th	dose dependent	rect.	4	19
195	100.09	humidity	90	1440	< th	dose dependent	rect.	9	7
209	100.24	humidity	80	720	> th	dose independent	rect.	4	18
228	100.38	humidity	70	720	> th	dose dependent	sin	21	NA
237	100.42	humidity	60	720	> th	dose dependent	sin	19	NA
250	100.51	humidity	70	90	> th	dose dependent	rect.	5	18
261	100.59	humidity	80	720	> th	dose independent	sin	22	NA
385	101.31	humidity	60	720	> th	dose dependent	rect.	9	22
445	101.62	humidity	50	1440	> th	dose dependent	sin	0	NA
473	101.71	humidity	90	1440	< th	dose dependent	sin	0	NA
545	101.93	humidity	50	1440	> th	dose dependent	rect.	13	1
786	102.67	humidity	90	1440	< th	dose dependent	rect.	13	1
929	103.09	humidity	70	720	> th	dose independent	rect.	13	18
946	103.14	radiation	1	720	< th	dose independent	rect.	7	18
953	103.16	humidity	70	720	> th	dose independent	rect.	13	10