BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0572500 Os11g0572500|AK068493
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0572500  Similar to RING-H2 finger protein RHF1a (Fragm...   213   2e-56
Os03g0788800  Zinc finger, RING-type domain containing protein    152   6e-38

>Os11g0572500 Similar to RING-H2 finger protein RHF1a (Fragment)
          Length = 104

 Score =  213 bits (542), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   YQCCDSVAMASGTDEKAKMEGLTSAAAFVEGGIQDACDDACSICLEAFCESDPSTLTGCK 60
           YQCCDSVAMASGTDEKAKMEGLTSAAAFVEGGIQDACDDACSICLEAFCESDPSTLTGCK
Sbjct: 1   YQCCDSVAMASGTDEKAKMEGLTSAAAFVEGGIQDACDDACSICLEAFCESDPSTLTGCK 60

Query: 61  HEFHLQCILEWCQRSSQCPMCWQPISLKDPTRQSCSRQWSVKGM 104
           HEFHLQCILEWCQRSSQCPMCWQPISLKDPTRQSCSRQWSVKGM
Sbjct: 61  HEFHLQCILEWCQRSSQCPMCWQPISLKDPTRQSCSRQWSVKGM 104



>Os03g0788800 Zinc finger, RING-type domain containing protein
          Length = 372

 Score =  152 bits (384), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 75/81 (92%), Gaps = 1/81 (1%)

Query: 14 DEKAKMEG-LTSAAAFVEGGIQDACDDACSICLEAFCESDPSTLTGCKHEFHLQCILEWC 72
          DEK KME  L+SAAAFVEGG+QDACDDACSICLEAFC++DPST+T CKHE+HLQCILEWC
Sbjct: 2  DEKVKMESKLSSAAAFVEGGVQDACDDACSICLEAFCDNDPSTVTSCKHEYHLQCILEWC 61

Query: 73 QRSSQCPMCWQPISLKDPTRQ 93
          QRSSQCPMCWQPIS+KDP  Q
Sbjct: 62 QRSSQCPMCWQPISMKDPMSQ 82



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.130    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,914,155
Number of extensions: 147879
Number of successful extensions: 727
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 4
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)