Os11g0572500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein RHF1a (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os11g0572500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RING-H2 finger protein RHF1a (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.44 | 0.166 | 13.1 | -0.32 | 0.087 | 0.366 | 0.128 | -0.239 | 0.182 | 2.99 | 17.63 | 80 | -- | -- |
| 12.57 | 0.165 | 13.1 | -0.309 | 0.0894 | 0.358 | -0.0893 | -- | 0.182 | 2.18 | 17.65 | 80 | -- | -- |
| 12.46 | 0.164 | 13.1 | -0.325 | 0.0904 | 0.339 | -- | -0.166 | 0.181 | 2.13 | 16.72 | 71 | -- | -- |
| 12.56 | 0.165 | 13.1 | -0.314 | 0.0806 | 0.357 | -- | -- | 0.182 | 2.93 | 16.67 | 68 | -- | -- |
| 12.67 | 0.166 | 13.1 | -0.31 | -- | 0.411 | -- | -0.187 | 0.185 | -- | 16.69 | 79 | -- | -- |
| 16.29 | 0.189 | 13.1 | -0.342 | 0.372 | -- | -0.0744 | -- | 0.158 | 1.12 | -- | -- | -- | -- |
| 16.31 | 0.189 | 13.1 | -0.34 | 0.372 | -- | -- | -- | 0.159 | 1.13 | -- | -- | -- | -- |
| 12.81 | 0.167 | 13.1 | -0.303 | -- | 0.409 | -- | -- | 0.19 | -- | 16.7 | 83 | -- | -- |
| 15.1 | 0.181 | 13.1 | -- | 0.0871 | 0.35 | -- | -- | 0.197 | 3.56 | 16.68 | 60 | -- | -- |
| 24.9 | 0.233 | 13.1 | -0.325 | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
| 19.35 | 0.206 | 13.1 | -- | 0.366 | -- | -- | -- | 0.197 | 1.1 | -- | -- | -- | -- |
| 15.24 | 0.182 | 13.1 | -- | -- | 0.416 | -- | -- | 0.227 | -- | 16.69 | 89 | -- | -- |
| 27.69 | 0.246 | 13.1 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.87 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 6 | 11.98 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 17 |
| 7 | 11.98 | radiation | 20 | 30 | < th | dose dependent | sin | 23 | NA |
| 9 | 12.02 | radiation | 10 | 30 | < th | dose independent | sin | 23 | NA |
| 14 | 12.04 | radiation | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 31 | 12.12 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 19 |
| 45 | 12.21 | radiation | 10 | 10 | < th | dose independent | rect. | 4 | 19 |
| 61 | 12.24 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 85 | 12.33 | radiation | 20 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 89 | 12.34 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 105 | 12.37 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 135 | 12.44 | radiation | 20 | 270 | < th | dose dependent | sin | 4 | NA |
| 161 | 12.47 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 187 | 12.51 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 215 | 12.56 | radiation | 10 | 90 | > th | dose independent | rect. | 7 | 9 |
| 216 | 12.56 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 225 | 12.58 | radiation | 10 | 270 | < th | dose independent | sin | 3 | NA |
| 246 | 12.61 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 250 | 12.62 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 263 | 12.63 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 23 |
| 280 | 12.64 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 365 | 12.70 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 380 | 12.72 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 408 | 12.74 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 431 | 12.75 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 508 | 12.79 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 554 | 12.82 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 597 | 12.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 644 | 12.88 | temperature | 15 | 270 | > th | dose independent | rect. | 2 | 17 |
| 648 | 12.88 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 752 | 12.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 831 | 12.96 | radiation | 10 | 10 | < th | dose independent | rect. | 17 | 23 |
| 880 | 12.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 943 | 13.02 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 16 |
| 977 | 13.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |