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Os03g0788800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0182) R2 : 0.0371
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0383) R2dN8 : 0.0479 R2N8 : 0.0371
σ : 0.343
deviance : 53.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.79 0.269 11.9 0.588 0.156 0.921 -0.244 -0.0516 0.391 8.51 28.22 10 -- --
32.76 0.267 11.9 0.574 0.16 0.917 -0.233 -- 0.393 8.12 27.43 7 -- --
32.94 0.267 11.9 0.583 0.153 0.935 -- 0.0542 0.393 8.25 27.38 7 -- --
32.92 0.267 11.9 0.566 0.163 0.912 -- -- 0.392 7.97 27.35 7 -- --
33.88 0.271 11.9 0.572 -- 0.929 -- 0.0426 0.394 -- 27.68 56 -- --
44.88 0.314 12 0.349 0.317 -- 0.0876 -- 0.193 4.01 -- -- -- --
44.9 0.314 12 0.348 0.318 -- -- -- 0.192 4.05 -- -- -- --
33.88 0.271 11.9 0.579 -- 0.928 -- -- 0.395 -- 27.7 55 -- --
40.53 0.298 11.9 -- 0.185 0.687 -- -- 0.285 6.35 27.35 7 -- --
50.42 0.332 12 0.361 -- -- -- -- 0.201 -- -- -- -- --
48.09 0.324 12 -- 0.325 -- -- -- 0.153 4.04 -- -- -- --
42.1 0.302 11.9 -- -- 0.879 -- -- 0.26 -- 36.03 6 -- --
53.85 0.343 12 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.47 temperature 25.0 10 < th dose dependent rect. 24 22
3 30.71 temperature 25.0 90 < th dose dependent rect. 1 22
9 31.01 wind 7.0 43200 > th dose dependent rect. 17 4
12 31.19 wind 7.0 43200 < th dose independent rect. 18 3
13 31.21 wind 7.0 43200 > th dose independent rect. 17 4
18 31.47 wind 7.0 43200 < th dose independent rect. 20 1
19 31.53 wind 7.0 43200 > th dose dependent rect. 20 1
22 31.72 wind 7.0 43200 > th dose independent rect. 20 1
25 31.78 temperature 30.0 90 < th dose dependent rect. 13 20
26 31.78 temperature 30.0 10 < th dose dependent rect. 12 21
34 31.91 temperature 30.0 90 < th dose dependent rect. 11 22
42 32.01 temperature 30.0 90 < th dose dependent rect. 13 22
73 32.24 wind 7.0 43200 > th dose independent rect. 15 7
80 32.30 wind 7.0 43200 < th dose independent rect. 15 7
89 32.42 radiation 1.0 43200 < th dose dependent rect. 20 8
103 32.49 temperature 30.0 90 < th dose dependent rect. 15 18
127 32.61 wind 5.0 43200 < th dose independent rect. 17 8
136 32.63 wind 5.0 43200 > th dose dependent rect. 15 13
140 32.64 wind 7.0 43200 > th dose independent rect. 15 13
151 32.70 wind 7.0 43200 < th dose independent rect. 15 13
171 32.78 temperature 30.0 10 < th dose dependent rect. 3 23
182 32.82 radiation 1.0 43200 < th dose dependent rect. 24 4
212 32.90 wind 5.0 43200 > th dose dependent sin 14 NA
227 32.94 humidity 60.0 1440 > th dose dependent rect. 9 3
237 32.98 wind 5.0 43200 > th dose independent sin 14 NA
246 33.00 humidity 60.0 1440 > th dose dependent rect. 11 1
257 33.03 temperature 30.0 10 < th dose dependent no NA NA
260 33.04 wind 5.0 43200 < th dose independent sin 14 NA
268 33.05 temperature 30.0 10 < th dose dependent rect. 21 23
293 33.10 wind 9.0 43200 > th dose independent rect. 17 12
295 33.10 temperature 10.0 10 > th dose dependent no NA NA
297 33.10 humidity 90.0 1440 < th dose dependent rect. 11 1
307 33.12 temperature 25.0 30 < th dose dependent rect. 5 23
320 33.14 temperature 30.0 10 < th dose dependent rect. 15 23
352 33.20 radiation 1.0 43200 < th dose dependent rect. 24 2
358 33.21 humidity 50.0 14400 > th dose independent rect. 17 17
410 33.30 humidity 90.0 1440 < th dose dependent rect. 9 3
422 33.31 temperature 25.0 10 < th dose dependent rect. 5 17
435 33.32 temperature 25.0 30 < th dose dependent rect. 17 23
452 33.34 temperature 25.0 30 < th dose dependent rect. 19 23
511 33.42 temperature 25.0 30 < th dose dependent rect. 7 23
517 33.44 humidity 80.0 43200 > th dose independent rect. 22 1
550 33.50 humidity 50.0 14400 > th dose independent rect. 16 19
578 33.55 humidity 60.0 14400 < th dose dependent rect. 17 16
608 33.59 humidity 50.0 14400 < th dose dependent rect. 16 19
720 33.79 precipitation 0.1 43200 > th dose dependent rect. 17 1
728 33.80 temperature 15.0 90 > th dose dependent rect. 6 23
734 33.81 humidity 50.0 14400 < th dose independent rect. 16 19
738 33.82 precipitation 0.1 43200 > th dose independent rect. 17 1
773 33.88 precipitation 0.1 43200 < th dose independent rect. 17 1
780 33.88 precipitation 0.1 43200 < th dose dependent rect. 17 1
822 33.97 wind 7.0 43200 > th dose independent rect. 15 1
828 33.98 humidity 80.0 43200 < th dose independent rect. 22 1
876 34.04 wind 7.0 43200 < th dose independent rect. 15 1
877 34.04 temperature 25.0 10 < th dose dependent sin 4 NA
919 34.07 temperature 15.0 10 > th dose dependent rect. 2 23
941 34.11 wind 5.0 43200 > th dose independent rect. 3 19
946 34.11 temperature 10.0 1440 > th dose dependent rect. 11 1
958 34.12 wind 5.0 43200 > th dose independent rect. 3 21
963 34.13 wind 5.0 43200 < th dose independent rect. 3 21
975 34.14 wind 5.0 43200 < th dose independent rect. 3 19
984 34.15 wind 5.0 43200 > th dose independent rect. 6 18