BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0788800 Os03g0788800|AK071670
(372 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0788800 Zinc finger, RING-type domain containing protein 647 0.0
Os11g0572500 Similar to RING-H2 finger protein RHF1a (Fragm... 151 6e-37
>Os03g0788800 Zinc finger, RING-type domain containing protein
Length = 372
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/359 (88%), Positives = 317/359 (88%)
Query: 1 MDEKVKMESKLSSAAAFVEGGVQDACDDACSICLEAFCDNDPSTVTSCKHEYHLQCILEW 60
MDEKVKMESKLSSAAAFVEGGVQDACDDACSICLEAFCDNDPSTVTSCKHEYHLQCILEW
Sbjct: 1 MDEKVKMESKLSSAAAFVEGGVQDACDDACSICLEAFCDNDPSTVTSCKHEYHLQCILEW 60
Query: 61 CQRSSQCPMCWQPISMKDPMSQELLEAVEQERNIRANRLNTAAVFHHPVLGDFEVPVGAD 120
CQRSSQCPMCWQPISMKDPMSQELLEAVEQERNIRANRLNTAAVFHHPVLGDFEVPVGAD
Sbjct: 61 CQRSSQCPMCWQPISMKDPMSQELLEAVEQERNIRANRLNTAAVFHHPVLGDFEVPVGAD 120
Query: 121 DAELEERIIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQIVVFSRNEAIPGGSLHASS 180
DAELEERIIQ PQIVVFSRNEAIPGGSLHASS
Sbjct: 121 DAELEERIIQHLAAAAAMRRSHRHGRRDGHRSRSGSHSRPQIVVFSRNEAIPGGSLHASS 180
Query: 181 GQDEDHEQSSDLGSAHPFAALAAVDQGHMSGGSQLYVGHSDQGASNPSLHDERAMSRTSE 240
GQDEDHEQSSDLGSAHPFAALAAVDQGHMSGGSQLYVGHSDQGASNPSLHDERAMSRTSE
Sbjct: 181 GQDEDHEQSSDLGSAHPFAALAAVDQGHMSGGSQLYVGHSDQGASNPSLHDERAMSRTSE 240
Query: 241 NQSAPVNQDTAGPSDLQSFSDTLRSRLQSASMKYKDSITKSTRGWKERWFSRSNTISGLG 300
NQSAPVNQDTAGPSDLQSFSDTLRSRLQSASMKYKDSITKSTRGWKERWFSRSNTISGLG
Sbjct: 241 NQSAPVNQDTAGPSDLQSFSDTLRSRLQSASMKYKDSITKSTRGWKERWFSRSNTISGLG 300
Query: 301 TEVRREVNAGIAAVSRMMERLETKDDTGXXXXXXXXXXXXXDANNQRTVSPNHAAVVNE 359
TEVRREVNAGIAAVSRMMERLETKDDTG DANNQRTVSPNHAAVVNE
Sbjct: 301 TEVRREVNAGIAAVSRMMERLETKDDTGPSAVPAASACSPSDANNQRTVSPNHAAVVNE 359
>Os11g0572500 Similar to RING-H2 finger protein RHF1a (Fragment)
Length = 104
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 68/81 (83%), Positives = 75/81 (92%), Gaps = 1/81 (1%)
Query: 2 DEKVKMESKLSSAAAFVEGGVQDACDDACSICLEAFCDNDPSTVTSCKHEYHLQCILEWC 61
DEK KME L+SAAAFVEGG+QDACDDACSICLEAFC++DPST+T CKHE+HLQCILEWC
Sbjct: 14 DEKAKMEG-LTSAAAFVEGGIQDACDDACSICLEAFCESDPSTLTGCKHEFHLQCILEWC 72
Query: 62 QRSSQCPMCWQPISMKDPMSQ 82
QRSSQCPMCWQPIS+KDP Q
Sbjct: 73 QRSSQCPMCWQPISLKDPTRQ 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.126 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,827,206
Number of extensions: 406055
Number of successful extensions: 1320
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1323
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 270
Effective length of database: 11,709,973
Effective search space: 3161692710
Effective search space used: 3161692710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)