BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0568300 Os11g0568300|AK064398
(405 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0568300 HMG-I and HMG-Y, DNA-binding domain containing... 664 0.0
Os05g0300700 Conserved hypothetical protein 100 2e-21
Os03g0572250 Hypothetical protein 88 9e-18
Os03g0712100 Conserved hypothetical protein 76 4e-14
>Os11g0568300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 405
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/405 (82%), Positives = 333/405 (82%)
Query: 1 MVSTXXXXXXXXXXXXXXXXXXEEAARSPVLSSPVVXXXXXXXXXXXXXXXXXXXXXXMQ 60
MVST EEAARSPVLSSPVV MQ
Sbjct: 1 MVSTRGAAANAPGRRGRPPKAAEEAARSPVLSSPVVAADAAEGYERERAERIRENMERMQ 60
Query: 61 KLGILDLATRFNQXXXXXXXXXXXXXXXXXXXXVTPGSVGVGRMIKPASPSPARRSLRLK 120
KLGILDLATRFNQ VTPGSVGVGRMIKPASPSPARRSLRLK
Sbjct: 61 KLGILDLATRFNQSAGGLAGSGSGRGRGRRKAAVTPGSVGVGRMIKPASPSPARRSLRLK 120
Query: 121 NVEPVSYCEIRTKKDKDDNEGGNSVLIEAGSKEEVYTEEDEKLLGPCVEPWTLFVDGYGK 180
NVEPVSYCEIRTKKDKDDNEGGNSVLIEAGSKEEVYTEEDEKLLGPCVEPWTLFVDGYGK
Sbjct: 121 NVEPVSYCEIRTKKDKDDNEGGNSVLIEAGSKEEVYTEEDEKLLGPCVEPWTLFVDGYGK 180
Query: 181 DGKRIYDQVRGQTCHQCRQKTLGHHTSCCKCQIVQGQFCGDCLYMRYGENVLEAKKNPDW 240
DGKRIYDQVRGQTCHQCRQKTLGHHTSCCKCQIVQGQFCGDCLYMRYGENVLEAKKNPDW
Sbjct: 181 DGKRIYDQVRGQTCHQCRQKTLGHHTSCCKCQIVQGQFCGDCLYMRYGENVLEAKKNPDW 240
Query: 241 ICPVCRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAHYLIATQRASPAGSADSNKVA 300
ICPVCRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAHYLIATQRASPAGSADSNKVA
Sbjct: 241 ICPVCRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAHYLIATQRASPAGSADSNKVA 300
Query: 301 ATKSEASSESDQAPVAKEDQEDAEMSGKAIQKVEADHQVXXXXXXXXXXXXRSESVVTSD 360
ATKSEASSESDQAPVAKEDQEDAEMSGKAIQKVEADHQV RSESVVTSD
Sbjct: 301 ATKSEASSESDQAPVAKEDQEDAEMSGKAIQKVEADHQVNNPPDDSDNDDSRSESVVTSD 360
Query: 361 SQDCQVNLDIGCATPSKPTGPKKRKWIERSPDCVASRLRSRSNKS 405
SQDCQVNLDIGCATPSKPTGPKKRKWIERSPDCVASRLRSRSNKS
Sbjct: 361 SQDCQVNLDIGCATPSKPTGPKKRKWIERSPDCVASRLRSRSNKS 405
>Os05g0300700 Conserved hypothetical protein
Length = 615
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 182 GKRIYDQVRGQTCHQCRQKTLGHHTSCCK-------CQIVQGQFCGDCLYMRYGENVLEA 234
G RIYD G+TCHQCRQKT+ SC K C I Q+C CL+ RYG+ +
Sbjct: 130 GGRIYDPENGKTCHQCRQKTMDFAASCHKIKKNNKQCTI---QYCRKCLFNRYGQEAEKV 186
Query: 235 KKNPDWICPVCRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAHYLIATQRASPAGSA 294
+ W CP C+ ICNCS C KKG PTG + G SV H L + A A
Sbjct: 187 ANDGTWTCPKCKDICNCSFCMKKKGLPPTGILAHAAKASGCASVHHLLKKGKEAVAAAQR 246
Query: 295 DSNKVAATKSEASSESDQAPVAKEDQEDAE 324
+ KV +T + S + P A D+ AE
Sbjct: 247 STQKVRSTPVKKSPKRAIQPDAAADEPLAE 276
>Os03g0572250 Hypothetical protein
Length = 210
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 63/101 (62%), Gaps = 8/101 (7%)
Query: 59 MQKLGILDLATRFNQXXXXXXXXXXXXXXXXXXXXVTPGSVGVGRMIKPASPSPARRSLR 118
MQKLGI DLA RFNQ V P + G PASPSPARRSLR
Sbjct: 32 MQKLGIRDLANRFNQSATGFAGGGSWSGSDRWRRKV-PVTAG------PASPSPARRSLR 84
Query: 119 LKNVEPVSYCEIRTKKDKDDNEGGNSVLIEAGSKEEVYTEE 159
LK+++PV+YCEIRT+K K D EGG+SV IE GS+EEV E+
Sbjct: 85 LKSLDPVNYCEIRTRKGK-DVEGGSSVPIEVGSEEEVNAED 124
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 311 DQAPVAKEDQEDAEMSGKAIQKVEADHQVXXXXXXXXXXXXRSESVVTSDSQDCQVNLD- 369
D APVAKEDQ +E AIQ +ADH ESVVTS SQDC+VNL+
Sbjct: 124 DAAPVAKEDQGHSE----AIQDEDADHHQVNDPADDDGDEDDRESVVTSSSQDCEVNLED 179
Query: 370 -IGCATPSKPTGPKKRKWIERSPDCVASRL 398
IGCAT SKP GPKKRK IER+PD V L
Sbjct: 180 IIGCATSSKPAGPKKRKLIERNPDYVLREL 209
>Os03g0712100 Conserved hypothetical protein
Length = 297
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 185 IYDQVRGQTCHQCRQKTLGHH------------------TSCCKCQIVQGQFCGDCLYMR 226
+YD V G CH CRQK L T C C G C CL +R
Sbjct: 165 VYDPVLGICCHFCRQKKLCGEEGCKRCGEGDLNQPCIGKTDCSSCHSSYGILCRACLKVR 224
Query: 227 YGENVLEAKKNPDWICPVC---RG-----ICNCSICRTKKGWFPTGAAYRKVVSLGYKSV 278
YGE++ E +KN +W+CP C +G ICN SIC K+ PTG A GY+SV
Sbjct: 225 YGEDMDEVRKNKNWMCPHCIEEKGTKKFWICNSSICLKKRKLSPTGIAIYDAREQGYESV 284
Query: 279 AHYLI 283
AH L+
Sbjct: 285 AHLLM 289
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,940,954
Number of extensions: 488482
Number of successful extensions: 1380
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 5
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)