Os11g0568300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os11g0568300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.63 | 0.422 | 8.1 | 2.03 | 1.63 | -3.34 | 0.211 | -8.99 | 0.508 | 18.3 | 19.32 | 5044 | -- | -- |
| 89.43 | 0.444 | 8.29 | 2.17 | 1.64 | 1.38 | 0.188 | -- | 0.545 | 18.2 | 19.32 | 5044 | -- | -- |
| 80.32 | 0.417 | 8.06 | 1.94 | 1.63 | -4.45 | -- | -11.4 | 0.509 | 18.3 | 18.72 | 5091 | -- | -- |
| 89.52 | 0.444 | 8.29 | 2.17 | 1.64 | 1.38 | -- | -- | 0.546 | 18.2 | 19.32 | 5044 | -- | -- |
| 218.41 | 0.688 | 8.05 | 1.93 | -- | -4.28 | -- | -11.2 | 0.48 | -- | 18.57 | 4897 | -- | -- |
| 98.84 | 0.466 | 8.3 | 1.98 | 1.63 | -- | 0.16 | -- | 0.481 | 18.3 | -- | -- | -- | -- |
| 98.91 | 0.466 | 8.3 | 1.98 | 1.63 | -- | -- | -- | 0.482 | 18.3 | -- | -- | -- | -- |
| 228.77 | 0.708 | 8.26 | 2.1 | -- | 1.26 | -- | -- | 0.504 | -- | 19.32 | 5044 | -- | -- |
| 104.86 | 0.477 | 8.46 | -- | 1.63 | -1.59 | -- | -- | -0.213 | 18.2 | 36.67 | 47520 | -- | -- |
| 236.7 | 0.719 | 8.27 | 1.94 | -- | -- | -- | -- | 0.446 | -- | -- | -- | -- | -- |
| 202.12 | 0.665 | 8.35 | -- | 1.6 | -- | -- | -- | 0.261 | 18.4 | -- | -- | -- | -- |
| 243.34 | 0.727 | 8.42 | -- | -- | -1.54 | -- | -- | -0.23 | -- | 45.58 | 47520 | -- | -- |
| 335.51 | 0.855 | 8.32 | -- | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.21 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 2 | 70.80 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 3 | 71.25 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 7 | 71.75 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 10 | 72.14 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 11 | 72.14 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 19 | 72.53 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 25 | 72.58 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 48 | 73.36 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 52 | 73.49 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 9 |
| 83 | 74.27 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 114 | 74.61 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 169 | 75.21 | wind | 7 | 4320 | > th | dose independent | sin | 15 | NA |
| 196 | 75.41 | wind | 7 | 4320 | < th | dose independent | sin | 15 | NA |
| 238 | 75.75 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 259 | 75.90 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 275 | 76.04 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 292 | 76.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 295 | 76.19 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 328 | 76.43 | wind | 7 | 4320 | > th | dose dependent | sin | 15 | NA |
| 350 | 76.59 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 375 | 76.79 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 469 | 77.22 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 485 | 77.31 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 515 | 77.47 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 517 | 77.48 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 518 | 77.49 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 520 | 77.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 528 | 77.51 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 20 |
| 530 | 77.51 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 533 | 77.52 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 16 |
| 539 | 77.52 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 555 | 77.54 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 568 | 77.56 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 572 | 77.56 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 618 | 77.59 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 11 |
| 634 | 77.59 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 635 | 77.59 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 642 | 77.60 | humidity | 50 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 718 | 77.71 | humidity | 50 | 43200 | > th | dose independent | sin | 21 | NA |
| 790 | 77.82 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 820 | 77.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 835 | 77.91 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 846 | 77.95 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 851 | 77.95 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 863 | 77.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 866 | 77.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 887 | 78.03 | humidity | 60 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 932 | 78.12 | humidity | 60 | 43200 | < th | dose dependent | sin | 7 | NA |
| 945 | 78.15 | humidity | 50 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 952 | 78.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 957 | 78.17 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 959 | 78.17 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 998 | 78.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 1000 | 78.18 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 23 |