Os05g0300700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0300700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.89 | 0.225 | 10.7 | 0.0885 | 1.06 | -0.384 | -0.0188 | 4.5 | -0.00652 | 4.75 | 26.99 | 2677 | -- | -- |
| 26.49 | 0.242 | 10.8 | -0.931 | 1.05 | -0.123 | 0.0303 | -- | -0.182 | 4.89 | 19.06 | 21503 | -- | -- |
| 22.86 | 0.223 | 10.7 | 0.143 | 1.06 | -0.433 | -- | 4.94 | -0.0121 | 4.75 | 27.38 | 2661 | -- | -- |
| 25.83 | 0.237 | 10.8 | -1.05 | 1.07 | 0.162 | -- | -- | -0.29 | 4.89 | 29.37 | 13200 | -- | -- |
| 79.85 | 0.418 | 10.8 | -0.874 | -- | -0.7 | -- | -0.468 | -0.185 | -- | 27.38 | 2661 | -- | -- |
| 26.7 | 0.242 | 10.8 | -0.957 | 1.09 | -- | 0.054 | -- | -0.202 | 4.8 | -- | -- | -- | -- |
| 26.71 | 0.242 | 10.8 | -0.957 | 1.09 | -- | -- | -- | -0.203 | 4.8 | -- | -- | -- | -- |
| 79.89 | 0.418 | 10.8 | -0.84 | -- | -0.74 | -- | -- | -0.178 | -- | 27.38 | 2661 | -- | -- |
| 36.39 | 0.281 | 10.7 | -- | 1.03 | -0.625 | -- | -- | 0.193 | 4.76 | 18.6 | 46899 | -- | -- |
| 89.29 | 0.442 | 10.8 | -0.917 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 50.86 | 0.334 | 10.8 | -- | 1.07 | -- | -- | -- | -0.0961 | 4.82 | -- | -- | -- | -- |
| 86.03 | 0.433 | 10.7 | -- | -- | -1.3 | -- | -- | 0.0743 | -- | 7.295 | 47520 | -- | -- |
| 111.46 | 0.493 | 10.8 | -- | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 4 | 22.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 7 | 22.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 10 | 22.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 11 | 22.35 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 3 |
| 12 | 22.35 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 17 | 22.39 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 11 |
| 27 | 22.52 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 3 |
| 29 | 22.54 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 6 |
| 32 | 22.56 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 33 | 22.57 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 8 |
| 65 | 22.76 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 12 |
| 90 | 22.82 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 3 |
| 115 | 22.91 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 120 | 22.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 122 | 22.95 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 15 |
| 134 | 23.02 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 9 |
| 149 | 23.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 158 | 23.11 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 24 | 3 |
| 210 | 23.23 | temperature | 25 | 270 | < th | dose independent | sin | 10 | NA |
| 225 | 23.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 255 | 23.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 389 | 23.47 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 15 | 2 |
| 395 | 23.48 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 401 | 23.49 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 520 | 23.64 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 544 | 23.67 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 554 | 23.68 | temperature | 10 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 556 | 23.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 557 | 23.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 561 | 23.69 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 579 | 23.71 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 614 | 23.74 | wind | 3 | 30 | < th | dose dependent | rect. | 24 | 3 |
| 666 | 23.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 676 | 23.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 733 | 23.83 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 738 | 23.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 753 | 23.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 754 | 23.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 756 | 23.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 760 | 23.85 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 765 | 23.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 771 | 23.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 806 | 23.87 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 10 |
| 808 | 23.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 851 | 23.90 | temperature | 20 | 30 | > th | dose independent | rect. | 24 | 12 |
| 869 | 23.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 870 | 23.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 881 | 23.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 904 | 23.93 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 908 | 23.94 | wind | 3 | 30 | < th | dose independent | rect. | 24 | 3 |
| 930 | 23.96 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 944 | 23.96 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 998 | 23.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 4 |