BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0300700 Os05g0300700|AK067846
(615 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0300700 Conserved hypothetical protein 1108 0.0
Os11g0568300 HMG-I and HMG-Y, DNA-binding domain containing... 100 5e-21
Os03g0712100 Conserved hypothetical protein 77 5e-14
>Os05g0300700 Conserved hypothetical protein
Length = 615
Score = 1108 bits (2865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/615 (88%), Positives = 545/615 (88%)
Query: 1 MIPPLASLPKNFSISLAHINHLPHEANEQKSHFIIIHTNPLGFFRVPGFSFXXXXXXXXX 60
MIPPLASLPKNFSISLAHINHLPHEANEQKSHFIIIHTNPLGFFRVPGFSF
Sbjct: 1 MIPPLASLPKNFSISLAHINHLPHEANEQKSHFIIIHTNPLGFFRVPGFSFLLLSPPLDP 60
Query: 61 XXXXXXXXXXXXXXXXXXTMEAAXXXXXXXXXXXXXXXXPQQHEVXXXXXXXXXXXXGKS 120
TMEAA PQQHEV GKS
Sbjct: 61 SSSSPRSSALAVARRRPPTMEAAGVEVNGGGGGDVVVVVPQQHEVAAKQAAAAAAAKGKS 120
Query: 121 VESKGVRVVGGRIYDPENGKTCHQCRQKTMDFAASCHKIKKNNKQCTIQYCRKCLFNRYG 180
VESKGVRVVGGRIYDPENGKTCHQCRQKTMDFAASCHKIKKNNKQCTIQYCRKCLFNRYG
Sbjct: 121 VESKGVRVVGGRIYDPENGKTCHQCRQKTMDFAASCHKIKKNNKQCTIQYCRKCLFNRYG 180
Query: 181 QEAEKVANDGTWTCPKCKDICNCSFCMKKKGLPPTGILAHAAKASGCASVHHLLKKGKEA 240
QEAEKVANDGTWTCPKCKDICNCSFCMKKKGLPPTGILAHAAKASGCASVHHLLKKGKEA
Sbjct: 181 QEAEKVANDGTWTCPKCKDICNCSFCMKKKGLPPTGILAHAAKASGCASVHHLLKKGKEA 240
Query: 241 VAAAQRSTQKVRSTPVKKSPKRAIQPDAAADEPLAEGDENVCIDFNAAPVKKQKRSRKVG 300
VAAAQRSTQKVRSTPVKKSPKRAIQPDAAADEPLAEGDENVCIDFNAAPVKKQKRSRKVG
Sbjct: 241 VAAAQRSTQKVRSTPVKKSPKRAIQPDAAADEPLAEGDENVCIDFNAAPVKKQKRSRKVG 300
Query: 301 NGVALTKDESPDAPKEQVVLPKGTPVTSVAGAEWEPEDVGLALQFFEFCRTFAEIFQVRK 360
NGVALTKDESPDAPKEQVVLPKGTPVTSVAGAEWEPEDVGLALQFFEFCRTFAEIFQVRK
Sbjct: 301 NGVALTKDESPDAPKEQVVLPKGTPVTSVAGAEWEPEDVGLALQFFEFCRTFAEIFQVRK 360
Query: 361 GQPERILRDIAGGRGLRVVSSVIADFHITLLSIIQEGRGIKPITYSRDNDAWIVDTGKCI 420
GQPERILRDIAGGRGLRVVSSVIADFHITLLSIIQEGRGIKPITYSRDNDAWIVDTGKCI
Sbjct: 361 GQPERILRDIAGGRGLRVVSSVIADFHITLLSIIQEGRGIKPITYSRDNDAWIVDTGKCI 420
Query: 421 SESIFVPEGLPLDSLSQGVSGYKNLSPSCKLSVLNFLCDESLSTEKLRSCILSETKNPSR 480
SESIFVPEGLPLDSLSQGVSGYKNLSPSCKLSVLNFLCDESLSTEKLRSCILSETKNPSR
Sbjct: 421 SESIFVPEGLPLDSLSQGVSGYKNLSPSCKLSVLNFLCDESLSTEKLRSCILSETKNPSR 480
Query: 481 XXXXXXXXXXXXXXXTIKNTDEAVLLKTEGAAVAIEEDKNGISQQKDVKEVKNADTNEKK 540
TIKNTDEAVLLKTEGAAVAIEEDKNGISQQKDVKEVKNADTNEKK
Sbjct: 481 EKAHSAKEKEEPKEETIKNTDEAVLLKTEGAAVAIEEDKNGISQQKDVKEVKNADTNEKK 540
Query: 541 HGGFLRTNPFMVDKKVIYWKLDDYCNNTTMMLQEVDADDLMGNKDKWFMLNEDEKKIVEN 600
HGGFLRTNPFMVDKKVIYWKLDDYCNNTTMMLQEVDADDLMGNKDKWFMLNEDEKKIVEN
Sbjct: 541 HGGFLRTNPFMVDKKVIYWKLDDYCNNTTMMLQEVDADDLMGNKDKWFMLNEDEKKIVEN 600
Query: 601 YLSTRPKRRGRKAAQ 615
YLSTRPKRRGRKAAQ
Sbjct: 601 YLSTRPKRRGRKAAQ 615
>Os11g0568300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 405
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 130 GGRIYDPENGKTCHQCRQKTMDFAASCHKIKKNNKQCTI---QYCRKCLFNRYGQEAEKV 186
G RIYD G+TCHQCRQKT+ SC K C I Q+C CL+ RYG+ +
Sbjct: 182 GKRIYDQVRGQTCHQCRQKTLGHHTSCCK-------CQIVQGQFCGDCLYMRYGENVLEA 234
Query: 187 ANDGTWTCPKCKDICNCSFCMKKKGLPPTGILAHAAKASGCASVHHLLKKGKEAVAAAQR 246
+ W CP C+ ICNCS C KKG PTG + G SV H L + A A
Sbjct: 235 KKNPDWICPVCRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAHYLIATQRASPAGSA 294
Query: 247 STQKVRSTPVKKSPKRAIQPDAAADEPLAE 276
+ KV +T + S + P A D+ AE
Sbjct: 295 DSNKVAATKSEASSESDQAPVAKEDQEDAE 324
>Os03g0712100 Conserved hypothetical protein
Length = 297
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 22/126 (17%)
Query: 131 GRIYDPENGKTCHQCRQKTMDFAASCHKI-----------KKNNKQCTIQY---CRKCLF 176
G +YDP G CH CRQK + C + K + C Y CR CL
Sbjct: 163 GAVYDPVLGICCHFCRQKKLCGEEGCKRCGEGDLNQPCIGKTDCSSCHSSYGILCRACLK 222
Query: 177 NRYGQEAEKVANDGTWTCPKCKD--------ICNCSFCMKKKGLPPTGILAHAAKASGCA 228
RYG++ ++V + W CP C + ICN S C+KK+ L PTGI + A+ G
Sbjct: 223 VRYGEDMDEVRKNKNWMCPHCIEEKGTKKFWICNSSICLKKRKLSPTGIAIYDAREQGYE 282
Query: 229 SVHHLL 234
SV HLL
Sbjct: 283 SVAHLL 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,466,248
Number of extensions: 814474
Number of successful extensions: 2212
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2209
Number of HSP's successfully gapped: 3
Length of query: 615
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 508
Effective length of database: 11,448,903
Effective search space: 5816042724
Effective search space used: 5816042724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)