BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0543100 Os11g0543100|AK108274
(199 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0543100 Conserved hypothetical protein 200 6e-52
Os11g0282600 80 1e-15
Os11g0542100 Zinc finger, RING-type domain containing protein 72 3e-13
>Os11g0543100 Conserved hypothetical protein
Length = 199
Score = 200 bits (508), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/148 (79%), Positives = 117/148 (79%)
Query: 16 CLPDHEVEAQMRELGAMFSAAXXXXXXXXXXXXXYDCAAVVSGAAQSELTXXXXXXXXXX 75
CLPDHEVEAQMRELGAMFSAA YDCAAVVSGAAQSELT
Sbjct: 16 CLPDHEVEAQMRELGAMFSAAGGGCYNGGGGGGGYDCAAVVSGAAQSELTCNNGGVCGGA 75
Query: 76 XXXXXXXXRKREREVVEQYAAVASSAALLPIPGMMKVAAPVSRLVESGMTSTSGRSAAAV 135
RKREREVVEQYAAVASSAALLPIPGMMKVAAPVSRLVESGMTSTSGRSAAAV
Sbjct: 76 VGMGVGAGRKREREVVEQYAAVASSAALLPIPGMMKVAAPVSRLVESGMTSTSGRSAAAV 135
Query: 136 GDALVSELCAQSAEIDAVVRMERASPSW 163
GDALVSELCAQSAEIDAVVRMERASPSW
Sbjct: 136 GDALVSELCAQSAEIDAVVRMERASPSW 163
>Os11g0282600
Length = 151
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 45/52 (86%), Gaps = 3/52 (5%)
Query: 109 MMKVAAPVSRLVESGMTSTSGRS---AAAVGDALVSELCAQSAEIDAVVRME 157
MMKVA PVSRLVES TSTSGRS AAAVGDALVSELC QSA+IDAVVRME
Sbjct: 1 MMKVATPVSRLVESATTSTSGRSVASAAAVGDALVSELCMQSAKIDAVVRME 52
>Os11g0542100 Zinc finger, RING-type domain containing protein
Length = 327
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 65/114 (57%), Gaps = 12/114 (10%)
Query: 50 YDC--AAVVSGAAQSELTXXXXXXXXXXXXXXXXXXRKREREVVEQYAAVASSAALLPIP 107
Y+C AAVVSG AQS LT RKR REV +QY SSA LLPIP
Sbjct: 29 YNCGGAAVVSGGAQSGLTCNNGGGGGVVVS------RKRGREVEQQYYVPPSSAVLLPIP 82
Query: 108 GM---MKVAAPVSRLVESGMTSTSGR-SAAAVGDALVSELCAQSAEIDAVVRME 157
GM SR VESGM TSGR +AAA GDAL SE+ QS EIDAVVR E
Sbjct: 83 GMVVAPAADVAASRFVESGMACTSGRAAAAAFGDALASEVFIQSGEIDAVVRAE 136
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.122 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,182,191
Number of extensions: 86763
Number of successful extensions: 397
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 3
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)