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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0542100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0298) R2 : 0.233
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.877 (0.0778) R2dC : 0.214 R2C : 0.212
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.192 (0.0627) R2dN8 : 0.0203 R2N8 : 0.0181
σ : 0.561
deviance : 144.05
__
_____
C
peak time of C : 5.37
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.28 0.538 3.41 -0.172 0.856 -0.723 0.378 1.22 0.211 5.63 29.6 4077 -- --
131.38 0.534 3.38 0.0561 0.844 -0.59 0.418 -- 0.222 5.64 29.35 4071 -- --
131.56 0.534 3.41 -0.152 0.861 -0.74 -- 1.16 0.189 5.65 29.5 3935 -- --
131.71 0.535 3.39 0.0681 0.85 -0.59 -- -- 0.224 5.65 29.4 4071 -- --
168.86 0.605 3.39 0.00898 -- -0.626 -- 0.354 0.31 -- 29.9 2682 -- --
142.23 0.559 3.39 0.223 0.87 -- 0.449 -- 0.219 5.38 -- -- -- --
142.73 0.559 3.39 0.224 0.873 -- -- -- 0.217 5.38 -- -- -- --
168.83 0.605 3.38 0.086 -- -0.558 -- -- 0.319 -- 29.98 2679 -- --
131.81 0.535 3.39 -- 0.856 -0.605 -- -- 0.206 5.63 29.26 4078 -- --
182.46 0.631 3.4 0.254 -- -- -- -- 0.238 -- -- -- -- --
144.05 0.561 3.39 -- 0.877 -- -- -- 0.192 5.37 -- -- -- --
169.01 0.605 3.38 -- -- -0.576 -- -- 0.314 -- 29.98 2682 -- --
184.16 0.633 3.41 -- -- -- -- -- 0.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.23 temperature 20.0 270 > th dose dependent rect. 1 4
24 123.96 temperature 20.0 10 > th dose dependent rect. 2 5
35 124.42 temperature 20.0 270 > th dose independent rect. 2 3
38 124.50 temperature 20.0 90 > th dose independent rect. 4 1
43 124.76 temperature 20.0 30 > th dose independent rect. 4 3
65 125.61 atmosphere 1015.0 90 < th dose dependent rect. 4 1
68 125.68 temperature 25.0 720 < th dose independent rect. 19 7
69 125.70 wind 9.0 90 < th dose independent rect. 5 23
70 125.71 humidity 80.0 90 > th dose independent rect. 4 1
74 125.81 wind 3.0 270 < th dose dependent rect. 2 3
80 125.92 temperature 25.0 720 > th dose independent rect. 18 8
87 126.07 wind 3.0 90 < th dose independent rect. 4 1
90 126.13 radiation 1.0 90 < th dose dependent rect. 4 1
97 126.25 radiation 1.0 90 < th dose independent rect. 4 1
106 126.34 wind 3.0 30 < th dose independent rect. 4 3
107 126.34 wind 3.0 270 < th dose independent rect. 1 4
108 126.35 precipitation 0.1 90 < th dose independent rect. 4 1
109 126.35 humidity 50.0 90 > th dose dependent rect. 4 1
110 126.35 precipitation 0.1 90 < th dose dependent rect. 4 1
111 126.36 wind 7.0 90 < th dose independent rect. 4 1
113 126.36 temperature 10.0 90 > th dose independent rect. 4 1
115 126.36 temperature 30.0 90 < th dose independent rect. 4 1
116 126.36 humidity 50.0 90 > th dose independent rect. 4 1
119 126.36 atmosphere 995.0 90 > th dose independent rect. 4 1
120 126.36 atmosphere 1010.0 90 < th dose independent rect. 4 1
125 126.36 temperature 10.0 90 > th dose independent rect. 5 23
133 126.45 humidity 80.0 30 > th dose independent rect. 4 3
134 126.45 wind 9.0 90 < th dose dependent rect. 4 1
161 126.68 temperature 25.0 720 > th dose independent rect. 19 3
175 126.89 humidity 70.0 30 > th dose dependent rect. 4 3
185 126.97 humidity 80.0 270 > th dose independent rect. 2 3
198 127.07 atmosphere 995.0 90 > th dose independent rect. 5 23
213 127.20 atmosphere 1015.0 30 < th dose dependent rect. 4 3
214 127.21 atmosphere 995.0 30 > th dose independent rect. 7 21
223 127.32 radiation 10.0 10 < th dose independent rect. 4 4
227 127.35 wind 7.0 30 < th dose dependent rect. 4 3
239 127.46 wind 9.0 30 < th dose independent rect. 7 21
242 127.50 radiation 30.0 30 < th dose dependent rect. 4 3
258 127.64 precipitation 0.1 30 < th dose independent rect. 4 3
260 127.64 precipitation 0.1 30 < th dose dependent rect. 4 3
262 127.66 wind 7.0 30 < th dose independent rect. 4 3
266 127.66 temperature 20.0 720 > th dose dependent rect. 18 11
268 127.67 temperature 10.0 30 > th dose independent rect. 4 3
270 127.67 temperature 30.0 30 < th dose independent rect. 4 3
271 127.67 humidity 50.0 30 > th dose independent rect. 4 3
274 127.67 atmosphere 995.0 30 > th dose independent rect. 4 3
275 127.67 atmosphere 1015.0 30 < th dose independent rect. 4 3
279 127.67 temperature 10.0 30 > th dose independent rect. 7 21
284 127.72 temperature 25.0 720 < th dose independent sin 13 NA
287 127.73 temperature 20.0 720 > th dose dependent rect. 19 3
305 127.91 temperature 10.0 720 > th dose dependent rect. 18 5
312 127.95 temperature 25.0 720 > th dose dependent rect. 19 7
320 128.00 temperature 20.0 10 > th dose independent rect. 2 5
322 128.01 wind 3.0 270 < th dose dependent rect. 2 1
324 128.01 humidity 60.0 270 > th dose dependent rect. 2 3
340 128.07 wind 9.0 4320 < th dose independent rect. 5 1
353 128.13 atmosphere 995.0 90 > th dose dependent rect. 4 1
363 128.18 precipitation 0.1 270 < th dose independent rect. 2 3
367 128.18 precipitation 0.1 270 < th dose dependent rect. 2 3
377 128.23 temperature 10.0 270 > th dose dependent rect. 11 19
407 128.29 wind 9.0 270 < th dose independent rect. 5 21
412 128.31 temperature 25.0 720 > th dose independent sin 13 NA
416 128.32 temperature 10.0 720 > th dose dependent rect. 18 7
441 128.42 temperature 10.0 90 > th dose dependent rect. 13 18
471 128.52 temperature 10.0 720 > th dose dependent rect. 18 11
486 128.60 radiation 1.0 270 < th dose independent rect. 2 3
490 128.60 radiation 10.0 270 < th dose dependent rect. 2 3
511 128.65 temperature 10.0 270 > th dose independent rect. 2 3
513 128.65 temperature 30.0 270 < th dose independent rect. 2 3
514 128.65 humidity 50.0 270 > th dose independent rect. 2 3
517 128.65 atmosphere 995.0 270 > th dose independent rect. 2 3
518 128.65 atmosphere 1010.0 270 < th dose independent rect. 2 3
524 128.65 temperature 10.0 270 > th dose independent rect. 5 21
547 128.73 temperature 10.0 1440 > th dose independent rect. 5 1
550 128.73 temperature 30.0 1440 < th dose independent rect. 5 1
554 128.73 humidity 50.0 1440 > th dose independent rect. 5 1
563 128.73 atmosphere 995.0 1440 > th dose independent rect. 5 1
564 128.73 atmosphere 1015.0 1440 < th dose independent rect. 5 1
565 128.73 radiation 20.0 1440 < th dose independent rect. 5 1
578 128.73 temperature 10.0 1440 > th dose independent rect. 6 23
691 128.97 atmosphere 995.0 270 > th dose independent rect. 5 20
694 129.00 temperature 10.0 10 > th dose dependent rect. 14 17
726 129.11 temperature 20.0 270 > th dose independent rect. 11 19
735 129.15 precipitation 0.1 30 < th dose independent rect. 7 21
737 129.15 precipitation 0.1 30 < th dose dependent rect. 7 21
763 129.21 temperature 20.0 90 > th dose independent rect. 13 18
831 129.32 precipitation 0.1 90 < th dose independent rect. 5 23
834 129.32 precipitation 0.1 90 < th dose dependent rect. 5 23
901 129.44 radiation 40.0 720 < th dose dependent rect. 16 1
903 129.44 atmosphere 1015.0 270 < th dose dependent rect. 2 3
917 129.48 temperature 20.0 30 > th dose independent rect. 4 16
963 129.57 precipitation 0.1 270 < th dose independent rect. 5 20
965 129.57 precipitation 0.1 270 < th dose dependent rect. 5 20
991 129.64 wind 1.0 10 > th dose independent rect. 7 21
998 129.66 temperature 30.0 720 < th dose dependent rect. 18 8