BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0533500 Os11g0533500|AK121431
         (978 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0533500  Similar to Retinoblastoma-related protein 2b (...  1860   0.0  
Os08g0538700  Retinoblastoma-associated protein, A-box domai...   358   1e-98

>Os11g0533500 Similar to Retinoblastoma-related protein 2b (Fragment)
          Length = 978

 Score = 1860 bits (4818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/978 (93%), Positives = 914/978 (93%)

Query: 1   MASQPPAAVEARLADLCKXXXXXXXXXXXXXXXXXXXXXXXXXSPSFGSKSPEDAEKLCF 60
           MASQPPAAVEARLADLCK                         SPSFGSKSPEDAEKLCF
Sbjct: 1   MASQPPAAVEARLADLCKELGVDEGVAGEAAAVLEEGKGALLASPSFGSKSPEDAEKLCF 60

Query: 61  AFVLYCVSKLKETKAGSSGVRLWEILKGCKLKYDDFFKESQRLASRIDQVLGSRYGSDWE 120
           AFVLYCVSKLKETKAGSSGVRLWEILKGCKLKYDDFFKESQRLASRIDQVLGSRYGSDWE
Sbjct: 61  AFVLYCVSKLKETKAGSSGVRLWEILKGCKLKYDDFFKESQRLASRIDQVLGSRYGSDWE 120

Query: 121 ARLELKQLENLVNLLADASRFYCKAFNELFLSPSTDQEPGSTTNIPDYIRFGWLLFLILR 180
           ARLELKQLENLVNLLADASRFYCKAFNELFLSPSTDQEPGSTTNIPDYIRFGWLLFLILR
Sbjct: 121 ARLELKQLENLVNLLADASRFYCKAFNELFLSPSTDQEPGSTTNIPDYIRFGWLLFLILR 180

Query: 181 SKSPELFKDLVSCXXXXXXXXXXXXXXXPAKFRSFTIEGSSHLIKQTEKGVDLLPSLCHN 240
           SKSPELFKDLVSC               PAKFRSFTIEGSSHLIKQTEKGVDLLPSLCHN
Sbjct: 181 SKSPELFKDLVSCIHGLVAILAILLIHVPAKFRSFTIEGSSHLIKQTEKGVDLLPSLCHN 240

Query: 241 YHTSEDRLKEMMGKSYKVIEVFFSRKAINASEFKTVNLDKIDTDGLMYFKDLVDDEIFQS 300
           YHTSEDRLKEMMGKSYKVIEVFFSRKAINASEFKTVNLDKIDTDGLMYFKDLVDDEIFQS
Sbjct: 241 YHTSEDRLKEMMGKSYKVIEVFFSRKAINASEFKTVNLDKIDTDGLMYFKDLVDDEIFQS 300

Query: 301 NLEKLEKLSSTTGCQGELDLEMFLTSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTI 360
           NLEKLEKLSSTTGCQGELDLEMFLTSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTI
Sbjct: 301 NLEKLEKLSSTTGCQGELDLEMFLTSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTI 360

Query: 361 KNMLXXXXXXXXXXNGGSIKIVQMTPVTSAMTTAKWLRDVISSLPDKPSSKLEEFLSSCD 420
           KNML          NGGSIKIVQMTPVTSAMTTAKWLRDVISSLPDKPSSKLEEFLSSCD
Sbjct: 361 KNMLAAPSSPSSPANGGSIKIVQMTPVTSAMTTAKWLRDVISSLPDKPSSKLEEFLSSCD 420

Query: 421 TDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPWAEARKMEASKLYYRVLEA 480
           TDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPWAEARKMEASKLYYRVLEA
Sbjct: 421 TDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPWAEARKMEASKLYYRVLEA 480

Query: 481 ICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKTVIMMFPAVLESTGLTAFDL 540
           ICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKTVIMMFPAVLESTGLTAFDL
Sbjct: 481 ICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKTVIMMFPAVLESTGLTAFDL 540

Query: 541 SKIIENFVRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSLVVARPSLSTEINSLG 600
           SKIIENFVRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSLVVARPSLSTEINSLG
Sbjct: 541 SKIIENFVRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSLVVARPSLSTEINSLG 600

Query: 601 LLAEPMPSLDGIVARQSIHPDGLPPTPSKRWPSAGPDGNCYPQSPKRLCTESRNSLVERN 660
           LLAEPMPSLDGIVARQSIHPDGLPPTPSKRWPSAGPDGNCYPQSPKRLCTESRNSLVERN
Sbjct: 601 LLAEPMPSLDGIVARQSIHPDGLPPTPSKRWPSAGPDGNCYPQSPKRLCTESRNSLVERN 660

Query: 661 SQTPPPKQSQTGLSILKAKYHPLQATFASPTVSNPVSGNEKCAVVGVQIFFSKILKLAAI 720
           SQTPPPKQSQTGLSILKAKYHPLQATFASPTVSNPVSGNEKCAVVGVQIFFSKILKLAAI
Sbjct: 661 SQTPPPKQSQTGLSILKAKYHPLQATFASPTVSNPVSGNEKCAVVGVQIFFSKILKLAAI 720

Query: 721 RIRNLCERLRHEELTVSVYNIFKQILDQQTALFFNRHVDQIILCCLYGVAKVSQLSLTFK 780
           RIRNLCERLRHEELTVSVYNIFKQILDQQTALFFNRHVDQIILCCLYGVAKVSQLSLTFK
Sbjct: 721 RIRNLCERLRHEELTVSVYNIFKQILDQQTALFFNRHVDQIILCCLYGVAKVSQLSLTFK 780

Query: 781 EIVNNYKREPQCKPEVFRSIFVGSTNRNGGFGSRHVDIIVFYNQVFVPTVKPLLVALMPS 840
           EIVNNYKREPQCKPEVFRSIFVGSTNRNGGFGSRHVDIIVFYNQVFVPTVKPLLVALMPS
Sbjct: 781 EIVNNYKREPQCKPEVFRSIFVGSTNRNGGFGSRHVDIIVFYNQVFVPTVKPLLVALMPS 840

Query: 841 STRPEDKRNTNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYVSPLRQTKMDALLSPSSRS 900
           STRPEDKRNTNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYVSPLRQTKMDALLSPSSRS
Sbjct: 841 STRPEDKRNTNSQIPGSPKSSPFSNLPDMSPKKVSSSHNVYVSPLRQTKMDALLSPSSRS 900

Query: 901 FYACIGESTQAFQSPSKDLAAINSRLNYPTRRINTRINFDMVSDSVVAGSLGQPNGGXXX 960
           FYACIGESTQAFQSPSKDLAAINSRLNYPTRRINTRINFDMVSDSVVAGSLGQPNGG   
Sbjct: 901 FYACIGESTQAFQSPSKDLAAINSRLNYPTRRINTRINFDMVSDSVVAGSLGQPNGGSAS 960

Query: 961 XXXXXXXXXXXKKSKTDS 978
                      KKSKTDS
Sbjct: 961 SDPAAAFSPLSKKSKTDS 978



>Os08g0538700 Retinoblastoma-associated protein, A-box domain containing protein
          Length = 312

 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/300 (61%), Positives = 219/300 (73%), Gaps = 5/300 (1%)

Query: 347 KRVFETLASPTKTIKN---MLXXXXXXXXXXNG-GSIKIVQMTPVTSAMTTAKWLRDVIS 402
           +R ++ +ASP K+I +   M           NG  S K+  +TPV++AMTTAKWLR  IS
Sbjct: 7   QRKYDVMASPAKSITSPSPMSPPRFCASPTGNGYCSSKMAPITPVSTAMTTAKWLRSTIS 66

Query: 403 SLPDKPSSKLEEFLSSCDTDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPW 462
            LP KPS +L  F S+CD D+T D+ +R  IIL AIF + S        +   N  D  W
Sbjct: 67  PLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAIFTSSSFGERICTSVRSTNRIDAIW 126

Query: 463 AEARKMEASKLYYRVLEAICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKTV 522
            E RKMEA KLYYRVLE++CRAE+Q  + NNLT LLSNERFHRC+IACSAELVLATHKTV
Sbjct: 127 TEQRKMEALKLYYRVLESMCRAETQILSGNNLTSLLSNERFHRCMIACSAELVLATHKTV 186

Query: 523 IMMFPAVLESTGLTAFDLSKIIENFVRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLY 582
            MMFPAVLE TG+TAFDLSK+IE+FVRHE+TLPRELKRHLNSLEE+LLESM+WEKGSS+Y
Sbjct: 187 TMMFPAVLEKTGITAFDLSKVIESFVRHEDTLPRELKRHLNSLEERLLESMAWEKGSSMY 246

Query: 583 NSLVVARPSLSTEINSLGLLAEPMPSLDGIVARQSIHPDGLPPTP-SKRWPSAGPDGNCY 641
           NSL+VARP+LS EIN LGLLAEPMPSLD I A  +I  +GLPP P  K+  S G    CY
Sbjct: 247 NSLIVARPTLSAEINRLGLLAEPMPSLDAIAAHHNISLEGLPPLPFQKQEHSPGSPLACY 306



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,351,672
Number of extensions: 1255149
Number of successful extensions: 3611
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3610
Number of HSP's successfully gapped: 2
Length of query: 978
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 868
Effective length of database: 11,292,261
Effective search space: 9801682548
Effective search space used: 9801682548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)