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Os11g0533500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Retinoblastoma-related protein 2b (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0127) R2 : 0.149
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.24 (0.0268) R2dN8 : 0.193 R2N8 : 0.149
σ : 0.24
deviance : 26.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.66 0.197 11.2 -0.236 0.25 -0.297 0.107 -0.89 0.224 5.41 37.46 273 -- --
18.28 0.199 11.2 -0.22 0.225 -0.263 0.262 -- 0.233 5.05 41.53 409 -- --
17.69 0.196 11.2 -0.235 0.247 -0.3 -- -0.912 0.226 5.38 37.29 272 -- --
18.45 0.2 11.2 -0.218 0.228 -0.265 -- -- 0.23 5.16 41.53 409 -- --
19.15 0.204 11.2 -0.22 -- -0.398 -- -0.735 0.246 -- 38.66 435 -- --
19.19 0.205 11.2 -0.227 0.325 -- 0.325 -- 0.209 4.7 -- -- -- --
19.46 0.207 11.2 -0.228 0.327 -- -- -- 0.207 4.82 -- -- -- --
20.03 0.208 11.2 -0.226 -- -0.408 -- -- 0.241 -- 38.22 443 -- --
19.55 0.206 11.2 -- 0.201 -0.293 -- -- 0.261 5.24 40.06 419 -- --
25.13 0.234 11.2 -0.216 -- -- -- -- 0.216 -- -- -- -- --
20.83 0.214 11.2 -- 0.323 -- -- -- 0.233 4.84 -- -- -- --
20.66 0.212 11.2 -- -- -0.475 -- -- 0.303 -- 30.2 481 -- --
26.36 0.24 11.2 -- -- -- -- -- 0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.98 radiation 40 270 < th dose independent rect. 3 9
2 16.99 atmosphere 1005 10 < th dose independent rect. 12 6
6 17.07 atmosphere 1005 30 < th dose independent rect. 9 9
7 17.08 wind 7 4320 < th dose independent rect. 21 4
12 17.08 humidity 50 30 > th dose dependent rect. 7 17
13 17.10 atmosphere 1005 90 < th dose independent rect. 11 6
14 17.10 humidity 80 270 < th dose independent rect. 10 7
39 17.18 radiation 40 270 < th dose independent rect. 17 18
40 17.18 humidity 90 270 < th dose dependent rect. 10 6
44 17.19 radiation 40 270 < th dose independent rect. 4 19
45 17.19 humidity 90 270 < th dose dependent rect. 9 8
50 17.20 atmosphere 1005 30 > th dose independent rect. 7 12
57 17.21 radiation 40 270 < th dose independent rect. 3 21
61 17.22 radiation 40 270 < th dose independent rect. 7 15
62 17.22 wind 1 270 > th dose independent rect. 23 17
65 17.23 atmosphere 1005 10 > th dose independent rect. 7 17
68 17.23 atmosphere 1015 270 < th dose dependent rect. 9 8
72 17.24 humidity 60 10 > th dose independent rect. 7 17
78 17.25 humidity 80 270 < th dose independent rect. 22 20
79 17.25 humidity 90 270 < th dose dependent rect. 23 18
85 17.27 wind 7 4320 < th dose independent rect. 21 1
89 17.27 radiation 40 270 < th dose dependent rect. 7 15
96 17.28 wind 7 4320 > th dose dependent rect. 21 1
97 17.28 temperature 30 270 < th dose dependent rect. 23 5
98 17.28 humidity 90 10 < th dose dependent rect. 13 5
99 17.28 temperature 15 270 > th dose dependent rect. 9 8
100 17.28 humidity 90 10 < th dose dependent rect. 13 18
101 17.29 humidity 80 10 < th dose independent rect. 13 5
114 17.30 humidity 50 270 > th dose dependent rect. 4 18
116 17.30 humidity 50 270 > th dose dependent rect. 3 20
117 17.31 wind 7 4320 > th dose independent rect. 21 1
119 17.31 wind 7 1440 > th dose independent rect. 24 9
128 17.32 wind 1 270 > th dose independent rect. 22 8
135 17.32 radiation 20 90 < th dose dependent rect. 10 14
140 17.33 wind 5 4320 > th dose dependent rect. 21 4
144 17.33 radiation 40 270 < th dose dependent rect. 4 19
145 17.34 wind 7 4320 > th dose independent rect. 21 4
146 17.34 wind 7 1440 < th dose independent rect. 24 9
154 17.34 humidity 50 10 > th dose dependent rect. 10 14
164 17.35 humidity 80 10 < th dose independent rect. 13 18
165 17.35 temperature 25 30 > th dose dependent rect. 11 7
166 17.35 wind 7 1440 > th dose dependent rect. 24 9
171 17.36 atmosphere 1005 30 > th dose independent sin 22 NA
184 17.37 wind 1 90 > th dose independent rect. 24 7
185 17.37 radiation 40 270 < th dose independent rect. 9 14
188 17.37 wind 5 4320 > th dose dependent rect. 20 7
189 17.37 temperature 30 270 < th dose dependent rect. 22 7
217 17.39 radiation 40 270 < th dose dependent rect. 3 21
220 17.40 atmosphere 1005 90 > th dose independent rect. 7 8
223 17.40 radiation 40 270 < th dose independent rect. 16 21
227 17.40 temperature 30 10 < th dose dependent rect. 24 7
229 17.40 radiation 1 10 < th dose dependent rect. 11 13
245 17.40 humidity 50 90 > th dose dependent rect. 3 23
269 17.42 radiation 40 270 < th dose independent rect. 16 23
273 17.42 radiation 1 10 < th dose dependent rect. 13 11
324 17.44 humidity 70 270 > th dose independent rect. 4 18
345 17.45 temperature 30 270 < th dose independent rect. 3 9
358 17.45 atmosphere 995 270 > th dose dependent rect. 23 5
359 17.45 temperature 10 270 > th dose dependent rect. 17 6
366 17.45 radiation 1 10 < th dose dependent rect. 15 9
378 17.45 radiation 40 270 < th dose dependent rect. 17 18
388 17.46 wind 7 1440 < th dose independent rect. 21 12
395 17.46 atmosphere 995 10 > th dose dependent rect. 24 7
427 17.47 humidity 90 270 < th dose dependent rect. 13 1
457 17.48 humidity 60 10 > th dose independent rect. 5 20
468 17.48 humidity 90 10 < th dose dependent rect. 13 8
500 17.49 humidity 80 90 > th dose independent rect. 7 17
609 17.51 humidity 50 10 > th dose dependent rect. 5 20
611 17.52 humidity 50 270 > th dose independent rect. 15 8
613 17.52 radiation 1 30 < th dose independent rect. 11 13
658 17.53 radiation 1 30 < th dose independent rect. 13 11
664 17.53 humidity 50 270 > th dose dependent rect. 4 9
684 17.54 atmosphere 1005 10 < th dose independent sin 22 NA
688 17.54 atmosphere 1000 270 > th dose independent rect. 22 6
691 17.54 wind 7 270 < th dose independent rect. 3 9
692 17.54 temperature 15 270 > th dose independent rect. 3 9
743 17.55 temperature 20 270 > th dose independent rect. 17 6
793 17.56 humidity 50 90 > th dose independent rect. 17 8
795 17.56 radiation 1 30 < th dose independent rect. 15 9
801 17.56 temperature 30 30 < th dose independent rect. 7 17
809 17.56 radiation 40 270 > th dose independent rect. 12 22
814 17.56 atmosphere 995 270 > th dose dependent rect. 22 7
822 17.56 humidity 90 10 < th dose dependent rect. 13 13
831 17.56 temperature 10 30 > th dose dependent rect. 1 17
846 17.57 wind 1 270 > th dose independent rect. 16 7
848 17.57 atmosphere 1000 10 > th dose independent rect. 24 7
852 17.57 wind 7 90 < th dose independent rect. 17 8
868 17.57 humidity 50 10 > th dose dependent sin 18 NA
869 17.57 humidity 60 270 > th dose dependent sin 23 NA
935 17.58 wind 3 4320 > th dose dependent rect. 24 2
971 17.59 wind 7 1440 > th dose independent rect. 24 5
980 17.59 radiation 10 90 < th dose independent rect. 17 8
986 17.59 wind 7 1440 > th dose independent rect. 21 12
999 17.59 humidity 90 90 < th dose dependent sin 20 NA