BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0533500 Os11g0533500|AK121431
         (978 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12280.1  | chr3:3913671-3918433 REVERSE LENGTH=1014           865   0.0  

>AT3G12280.1 | chr3:3913671-3918433 REVERSE LENGTH=1014
          Length = 1013

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/929 (50%), Positives = 612/929 (65%), Gaps = 28/929 (3%)

Query: 46  SFGSKSPEDAEKLCFAFVLYCVSKLKETK-------AGSSGVRLWEILKGCKLKYDDFFK 98
           + GS + E+ E+  FAF+LY V +L   K       +G +   L +IL+  KL   DFFK
Sbjct: 58  NIGSGTREEVERFWFAFILYSVKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFK 117

Query: 99  ESQRLASRIDQVLGSRYGSDWEARLELKQLENLVNLLADASRFYCKAFNELFLSPSTDQE 158
           E  +   +   VLG  YG+DWE RL+ K+++     L+  S++Y + F E FL+   + E
Sbjct: 118 ELPQFVVKAGSVLGELYGADWENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAE 177

Query: 159 ---PGSTTNIPDYIRFGWLLFLILRSKSPELFKDLVSCXXXXXXXXXXXXXXXPAKFRSF 215
                S+T + D  RFGWLLFL LR+ +   FKDLV+C               P +FR+F
Sbjct: 178 KNSANSSTYLLDSYRFGWLLFLALRNHAFSRFKDLVTCSNGVVSILAILIIHVPCRFRNF 237

Query: 216 TIEGSSHLIKQTEKGVDLLPSLCHNYHTSEDRLKEMMGKSYKVIEVFFSRKAINASEFKT 275
           +I+ SS  +K+ +KGVDL+ SLC  Y  SED L+ ++ K+  ++E    +K   ASE +T
Sbjct: 238 SIQDSSRFVKKGDKGVDLVASLCKIYDASEDELRIVIDKANNLVETILKKKPSPASECQT 297

Query: 276 VNLDKIDTDGLMYFKDLVDDEIFQSNLEKLEKLSSTTGCQGELDLEMFLTSNDYVLNAEN 335
             LD ID DGL YF+DL+++    ++L  LEK       +GELD  +F+   D +L + +
Sbjct: 298 DKLDNIDPDGLTYFEDLLEETSISTSLITLEK--DYYDGKGELDERVFINEEDSLLGSGS 355

Query: 336 SSGSSANFGCSKRVFETLASPTKTIKNMLXXXXXXXXXXNG--GSIKIVQMTPVTSAMTT 393
            S  + N    KR  + L+SP +T  + L          NG  G+ K+   TPV++AMTT
Sbjct: 356 LSAGAVNITGVKRKIDALSSPARTFISPLSPHKSPAAKTNGISGATKLAA-TPVSTAMTT 414

Query: 394 AKWLRDVISSLPDKPSSKLEEFLSSCDTDLTSDVVKRVSIILEAIFPTKSIDRGTSIG-L 452
           AKWLR VIS L  KPS  LE FL SCD D+T+DV +R  IILEAIFP  S+      G L
Sbjct: 415 AKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQCGGGSL 474

Query: 453 NCANAFDIPWAEARKMEASKLYYRVLEAICRAESQNNNVNNLTPLLSNERFHRCLIACSA 512
              +  D  WAE R++EA KLYYRVLEA+C+AE+Q  + NNL  LL+NERFHRC++ACSA
Sbjct: 475 QAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCMLACSA 534

Query: 513 ELVLATHKTVIMMFPAVLESTGLTAFDLSKIIENFVRHEETLPRELKRHLNSLEEQLLES 572
           ELVLATHKT+ M+FPAVLE TG+TAFDLSK+IE+F+RHE++LPREL+RHLNSLEE+LLES
Sbjct: 535 ELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLES 594

Query: 573 MSWEKGSSLYNSLVVARPSLSTEINSLGLLAEPMPSLDGIVARQSIHPDGLPPTPSKRWP 632
           M WEKGSS+YNSL+VARPSL+ EIN LGLLAEPMPSLD I A  +   DG     S +  
Sbjct: 595 MVWEKGSSMYNSLIVARPSLALEINQLGLLAEPMPSLDAIAALINFS-DGANHASSVQKH 653

Query: 633 SAGPDGNCYPQSPKRLCTESRNSLVERNSQTPPPKQSQTGLSILKAKY--HPLQATFASP 690
              P  N   +SPKRLCT+ R+ LVERNS T P K     L  +K+K    PLQ+ FASP
Sbjct: 654 ETCPGQNGGIRSPKRLCTDYRSILVERNSFTSPVKDRLLALGNVKSKMLPPPLQSAFASP 713

Query: 691 TVSNPVSGNEKCAVVGVQIFFSKILKLAAIRIRNLCERLR-HEELTVSVYNIFKQILDQQ 749
           T  NP  G E CA  G+ IFF+KI KLAA+RI  + ERL+  +++  SVY  F+ +L Q+
Sbjct: 714 TRPNPGGGGETCAETGINIFFTKINKLAAVRINGMVERLQLSQQIRESVYCFFQHVLAQR 773

Query: 750 TALFFNRHVDQIILCCLYGVAKVSQLSLTFKEIVNNYKREPQCKPEVFRSIFVGSTN--R 807
           T+L F+RH+DQIILCC YGVAK+SQ+SLTF+EI+ NY+++PQCKP VFRS++V +    R
Sbjct: 774 TSLLFSRHIDQIILCCFYGVAKISQMSLTFREIIYNYRKQPQCKPLVFRSVYVDALQCRR 833

Query: 808 NGGFGSRHVDIIVFYNQVFVPTVKPLLVALMP--SSTRPEDKRNTNSQIPGSPKSSPFSN 865
            G  G  HVDII FYN++F+P VKPLLV L P  +    E       Q PGSPK S F +
Sbjct: 834 QGRIGPDHVDIITFYNEIFIPAVKPLLVELGPVRNDRAVEANNKPEGQCPGSPKVSVFPS 893

Query: 866 LPDMSPKKVSSSHNVYVSPLRQTKMDALLSPSSRSFYACIGESTQAFQSPSKDLAAINSR 925
           +PDMSPKKVS+ HNVYVSPLR +KMDAL+S S++S+YAC+GEST A+QSPSKDL+AIN+R
Sbjct: 894 VPDMSPKKVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHAYQSPSKDLSAINNR 953

Query: 926 LNYPTRRINTRINFD----MVSDSVVAGS 950
           LN  +      +NFD    MVSDS+VA S
Sbjct: 954 LNNSSSNRKRTLNFDAEAGMVSDSMVANS 982



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,057,514
Number of extensions: 853776
Number of successful extensions: 2565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2555
Number of HSP's successfully gapped: 1
Length of query: 978
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 870
Effective length of database: 8,145,641
Effective search space: 7086707670
Effective search space used: 7086707670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)