Os08g0538700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retinoblastoma-associated protein, A-box domain containing protein.
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Os08g0538700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retinoblastoma-associated protein, A-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.37 | 0.551 | 2.95 | -0.362 | 0.00999 | -0.502 | 0.27 | 2.31 | 0.187 | 19.4 | 1.151 | 16 | -- | -- |
| 141.79 | 0.559 | 2.92 | -0.249 | 0.0228 | -0.304 | -0.509 | -- | 0.219 | 5.43 | 1.151 | 16 | -- | -- |
| 137.56 | 0.546 | 2.95 | -0.368 | 0.00998 | -0.501 | -- | 2.33 | 0.187 | 19.9 | 1.162 | 16 | -- | -- |
| 142.43 | 0.559 | 2.92 | -0.249 | 0.023 | -0.294 | -- | -- | 0.221 | 5.04 | 1.162 | 16 | -- | -- |
| 137.57 | 0.546 | 2.95 | -0.368 | -- | -0.498 | -- | 2.33 | 0.187 | -- | 1.16 | 16 | -- | -- |
| 145.17 | 0.565 | 2.92 | -0.216 | 0.128 | -- | -0.406 | -- | 0.207 | 4.9 | -- | -- | -- | -- |
| 145.57 | 0.565 | 2.92 | -0.215 | 0.126 | -- | -- | -- | 0.208 | 4.36 | -- | -- | -- | -- |
| 142.46 | 0.558 | 2.92 | -0.249 | -- | -0.304 | -- | -- | 0.222 | -- | 1.119 | 15 | -- | -- |
| 144.05 | 0.562 | 2.91 | -- | 0.0257 | -0.273 | -- | -- | 0.247 | 5.13 | 1.199 | 13 | -- | -- |
| 146.42 | 0.565 | 2.92 | -0.21 | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
| 146.79 | 0.567 | 2.92 | -- | 0.122 | -- | -- | -- | 0.232 | 4.4 | -- | -- | -- | -- |
| 144.08 | 0.561 | 2.91 | -- | -- | -0.284 | -- | -- | 0.248 | -- | 1.119 | 15 | -- | -- |
| 147.59 | 0.567 | 2.92 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.73 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 30 | 123.87 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 194 | 127.37 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 195 | 127.47 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 196 | 127.56 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 197 | 127.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 200 | 127.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 204 | 127.56 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 213 | 127.56 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 214 | 127.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 234 | 127.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 237 | 127.56 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 238 | 127.56 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 247 | 127.57 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 249 | 127.58 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 274 | 127.64 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 279 | 127.69 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 281 | 127.70 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 285 | 127.77 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 286 | 127.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 288 | 127.77 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 289 | 127.77 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 292 | 127.77 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 294 | 127.77 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 296 | 127.77 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 301 | 127.77 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 302 | 127.77 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 303 | 127.77 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 305 | 127.77 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 310 | 127.77 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 319 | 127.95 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 331 | 128.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 337 | 128.39 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 338 | 128.39 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 341 | 128.45 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 385 | 129.01 | wind | 1.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 395 | 129.93 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 404 | 131.22 | wind | 1.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 405 | 131.22 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 458 | 132.27 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 560 | 135.19 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 564 | 135.22 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 581 | 135.52 | wind | 1.0 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 585 | 135.62 | temperature | 30.0 | 90 | < th | dose independent | sin | 9 | NA |
| 592 | 135.66 | temperature | 30.0 | 90 | > th | dose independent | sin | 9 | NA |
| 631 | 136.27 | wind | 3.0 | 30 | < th | dose independent | rect. | 11 | 2 |
| 634 | 136.30 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 640 | 136.36 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 653 | 136.65 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 686 | 136.82 | wind | 1.0 | 30 | < th | dose independent | rect. | 11 | 16 |
| 690 | 136.87 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 692 | 136.89 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 706 | 136.98 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 708 | 137.04 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 757 | 137.56 | wind | 1.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 769 | 137.65 | temperature | 30.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 798 | 137.90 | wind | 3.0 | 30 | < th | dose dependent | rect. | 11 | 16 |
| 823 | 138.14 | wind | 1.0 | 10 | > th | dose independent | sin | 15 | NA |
| 833 | 138.23 | radiation | 10.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 864 | 138.50 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 8 |
| 865 | 138.50 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 867 | 138.52 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 5 |
| 879 | 138.56 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 910 | 138.66 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 938 | 138.81 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 946 | 138.87 | radiation | 40.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 954 | 138.90 | wind | 1.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 983 | 138.99 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 8 |