BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0521900 Os11g0521900|AK100943
(664 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0521900 Similar to CTD phosphatase-like 3 1303 0.0
Os05g0390500 NLI interacting factor domain containing protein 252 7e-67
Os02g0796000 205 1e-52
Os02g0796100 140 4e-33
>Os11g0521900 Similar to CTD phosphatase-like 3
Length = 664
Score = 1303 bits (3373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/664 (95%), Positives = 633/664 (95%)
Query: 1 MQPTGRGGWAKDGGNISSYSSDGFQPNQNTRLGNNTTGNHNIRXXXXXXXXXXXXXXXXX 60
MQPTGRGGWAKDGGNISSYSSDGFQPNQNTRLGNNTTGNHNIR
Sbjct: 1 MQPTGRGGWAKDGGNISSYSSDGFQPNQNTRLGNNTTGNHNIRTDSTLASNLNNTTNNSG 60
Query: 61 XXPGIVQAPQTNSAPQTSSAPAVSLPAMLKDIAVNPTMLMQWIQMEQQKMSASEPQQKVT 120
PGIVQAPQTNSAPQTSSAPAVSLPAMLKDIAVNPTMLMQWIQMEQQKMSASEPQQKVT
Sbjct: 61 TSPGIVQAPQTNSAPQTSSAPAVSLPAMLKDIAVNPTMLMQWIQMEQQKMSASEPQQKVT 120
Query: 121 ASVGMTSNVTPGMVLPLGNAPKTTEVAAVPSVRPQVPMQSAPMHSQNDTGVIRMKPRDPR 180
ASVGMTSNVTPGMVLPLGNAPKTTEVAAVPSVRPQVPMQSAPMHSQNDTGVIRMKPRDPR
Sbjct: 121 ASVGMTSNVTPGMVLPLGNAPKTTEVAAVPSVRPQVPMQSAPMHSQNDTGVIRMKPRDPR 180
Query: 181 RILHSNIVQKNDTVPPVGVEQAKSNGTAPPDSQSSKDHLLNQDQKAEQLQAIALPSLPVT 240
RILHSNIVQKNDTVPPVGVEQAKSNGTAPPDSQSSKDHLLNQDQKAEQLQAIALPSLPVT
Sbjct: 181 RILHSNIVQKNDTVPPVGVEQAKSNGTAPPDSQSSKDHLLNQDQKAEQLQAIALPSLPVT 240
Query: 241 SSARPVTMNANPVSNSQLAATALMPPHGNTKQTSSSVNKADPRLAAGQNESNDDAATSTG 300
SSARPVTMNANPVSNSQLAATALMPPHGNTKQTSSSVNKADPRLAAGQNESNDDAATSTG
Sbjct: 241 SSARPVTMNANPVSNSQLAATALMPPHGNTKQTSSSVNKADPRLAAGQNESNDDAATSTG 300
Query: 301 PVTAPDAVPPASPYGDVDHLLDGYDDQQKALIQKERARRIKEQHKMFAARKXXXXXXXXX 360
PVTAPDAVPPASPYGDVDHLLDGYDDQQKALIQKERARRIKEQHKMFAARK
Sbjct: 301 PVTAPDAVPPASPYGDVDHLLDGYDDQQKALIQKERARRIKEQHKMFAARKLCLVLDLDH 360
Query: 361 XXXNSAKFIEVDHIHGEILRKKEEQDRERAERHLFCFNHMGMWTKLRPGIWNFLEKASKL 420
NSAKFIEVDHIHGEILRKKEEQDRERAERHLFCFNHMGMWTKLRPGIWNFLEKASKL
Sbjct: 361 TLLNSAKFIEVDHIHGEILRKKEEQDRERAERHLFCFNHMGMWTKLRPGIWNFLEKASKL 420
Query: 421 YELHLYTMGNKVYATEMAKVLDPTGTLFAGRVISRGDDGDPFDSDERVPKSKDLDGVLGM 480
YELHLYTMGNKVYATEMAKVLDPTGTLFAGRVISRGDDGDPFDSDERVPKSKDLDGVLGM
Sbjct: 421 YELHLYTMGNKVYATEMAKVLDPTGTLFAGRVISRGDDGDPFDSDERVPKSKDLDGVLGM 480
Query: 481 ESAVVIIDDSVRVWPHNKHNLIVVERYTYFPCSRRQFGLPGPSLLEIDRDERPEDGTLAS 540
ESAVVIIDDSVRVWPHNKHNLIVVERYTYFPCSRRQFGLPGPSLLEIDRDERPEDGTLAS
Sbjct: 481 ESAVVIIDDSVRVWPHNKHNLIVVERYTYFPCSRRQFGLPGPSLLEIDRDERPEDGTLAS 540
Query: 541 SLAVIERIHKNFFSHPNLNDADVRSILASEQQRILGGCRIVFSRIFPVGEANPHMHPLWQ 600
SLAVIERIHKNFFSHPNLNDADVRSILASEQQRILGGCRIVFSRIFPVGEANPHMHPLWQ
Sbjct: 541 SLAVIERIHKNFFSHPNLNDADVRSILASEQQRILGGCRIVFSRIFPVGEANPHMHPLWQ 600
Query: 601 TAEQFGAVCTNQIDDRVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRASELD 660
TAEQFGAVCTNQIDDRVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRASELD
Sbjct: 601 TAEQFGAVCTNQIDDRVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRASELD 660
Query: 661 FAVK 664
FAVK
Sbjct: 661 FAVK 664
>Os05g0390500 NLI interacting factor domain containing protein
Length = 536
Score = 252 bits (643), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 127/276 (46%), Positives = 172/276 (62%), Gaps = 12/276 (4%)
Query: 391 ERHLFCFNHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKVYATEMAKVLDPTGTLFAG 450
+R LF M M TKLRP + FL++AS ++E+++YTMG+K YA E+AK+LDP F
Sbjct: 209 DRSLFTLETMQMLTKLRPFVRRFLKEASDMFEMYIYTMGDKAYAIEIAKLLDPDNVYFGS 268
Query: 451 RVISRGDDGDPFDSDERVPKSKDLDGVLGMESAVVIIDDSVRVWPHNKHNLIVVERYTYF 510
+VIS +SD K LD VLG ES VI+DD+ VW +K NLI++ERY YF
Sbjct: 269 KVIS--------NSDCTQRHQKGLDVVLGDESVAVILDDTEYVWQKHKENLILMERYHYF 320
Query: 511 PCSRRQFGLPGPSLLEIDRDERPEDGTLASSLAVIERIHKNFFSHPN---LNDADVRSIL 567
S RQFG SL E +DER DG LA+ L V+ERIH FF + L+ DVR ++
Sbjct: 321 ASSCRQFGFGARSLSETMQDERENDGALATILDVLERIHTIFFDPDDQKPLSSRDVRQVI 380
Query: 568 ASEQQRILGGCRIVFSRIFPVGEANPHMHPLWQTAEQFGAVCTNQIDDRVTHVVANSLGT 627
+Q +L GC++VF+R+FP+ + +W+ AEQ GAVC +D VTHVVA LGT
Sbjct: 381 KRVRQEVLQGCKLVFTRVFPLHQRQQD-QMIWKMAEQLGAVCCTDVDSTVTHVVALDLGT 439
Query: 628 DKVNWALSTGRFVVHPGWVEASALLYRRASELDFAV 663
+K WA+S +F+VHP W+EA+ ++R E DF V
Sbjct: 440 EKARWAVSNKKFLVHPRWIEAANFRWQRQQEEDFPV 475
>Os02g0796000
Length = 420
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 173/328 (52%), Gaps = 20/328 (6%)
Query: 346 MFAARKXXXXXXXXXXXXNSAKFIEV-DHIHGEILRKKEEQDRERAERHLFCFNHMGMWT 404
+ ARK NS +F + D ++ DR R LF M T
Sbjct: 101 LLRARKLILVVDLDHTLINSTRFAHLSDDEKANGFTERTGDDRSRG---LFRMGLFRMIT 157
Query: 405 KLRPGIWNFLEKASKLYELHLYTMGNKVYATEMAKVLDPTGTLFAGRVISRGDDGDPFDS 464
KLRP + FL +AS ++E+H+YT+GN+ YAT +AK+LDP G F R+IS G+
Sbjct: 158 KLRPFVHEFLREASAMFEMHVYTLGNRNYATAVAKLLDPDGAYFGERIISSGESSQ---- 213
Query: 465 DERVPKSKDLDGVLG----ME-SAVVIIDDSVRVWPHNKHNLIVVERYTYFPCSRRQFGL 519
P K L V G ME +AVVI+DD+ VW + NLI +ERY YF SR +FG+
Sbjct: 214 ----PDRKSLGDVFGWAPEMERAAVVILDDTAEVWKGYRDNLIEMERYLYFASSRGKFGI 269
Query: 520 PGPSLLEIDRDERPEDGTLASSLAVIERIHKNFFSHPNLND--ADVRSILASEQQRILGG 577
SL E +RDE +G LA +L V+ R+H FFS + ADVR ++ ++ +L G
Sbjct: 270 AVRSLAERNRDESEREGALAVALRVLRRVHGEFFSGSVCSGSFADVREVIRQARREVLRG 329
Query: 578 CRIVFSRIFPVGEAN-PHMHPLWQTAEQFGAVCTNQIDDRVTHVVANSLGTDKVNWALST 636
C + F+ + P G+ HP+W+ AEQ GA C + + + VTH VA T K WA +
Sbjct: 330 CTVAFTGVIPSGDGGRASDHPVWRRAEQLGATCADDVGEGVTHFVAGKPVTRKALWAQTH 389
Query: 637 GRFVVHPGWVEASALLYRRASELDFAVK 664
G+F+V W+ A+ + + E + VK
Sbjct: 390 GKFLVDTEWINAAHFRWSKPEERMYPVK 417
>Os02g0796100
Length = 377
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 144/290 (49%), Gaps = 46/290 (15%)
Query: 392 RHLFCFNHMGMW----TKLRPGIWNFLEKASKLYELHLYTMGNKVYATEMAKVLDPTGTL 447
R LF +H + TKLRP + FL +AS + YA +AK+LDP G
Sbjct: 116 RGLFILDHASWFSAFITKLRPFVHGFLREASAMD-----------YAAAVAKLLDPDGVY 164
Query: 448 FAGRVISRGDDGDPFDSDERVPKSKDLDGVLG-------MESAVVIIDDSVRVWPHNKHN 500
F R+ISR D P P K LD V G +AVVI+DD+ VW N N
Sbjct: 165 FGERIISR--DESP------QPDRKSLDVVFGSAPASAAERAAVVILDDTAEVWEGNSDN 216
Query: 501 LIVVERYTYFPCSRRQFGLPGP---SLLE--IDRDERPEDGTLASSLAVIERIHKNFFSH 555
LI +ERY YF S R FG P SL E +D ER A++L V+ R+H FF+
Sbjct: 217 LIEMERYHYFASSCRDFGSPWECTHSLSERGVDESER------AAALRVLRRVHAGFFAG 270
Query: 556 PNLND-ADVRSILASEQQRILGGCRIVFSRIFPVGEANPHMHPLWQTAEQFGAVCTNQID 614
+ ADVR ++ ++ +L GC + F+R A+ H +W+ EQ GA C + +
Sbjct: 271 GGGSFVADVREVIRRTRREVLLGCTVAFTRAI----ASDDHHSVWRRTEQLGATCADDVG 326
Query: 615 DRVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRASELDFAVK 664
VTHVVA + T K WA G+ +V+P W+ A+ + + E F V+
Sbjct: 327 PEVTHVVATNPTTFKAVWAQVFGKLLVNPEWINAAHFRWSKPKEEHFPVR 376
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,438,303
Number of extensions: 999416
Number of successful extensions: 2908
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2896
Number of HSP's successfully gapped: 4
Length of query: 664
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 557
Effective length of database: 11,448,903
Effective search space: 6377038971
Effective search space used: 6377038971
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)