BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0513700 Os11g0513700|AK070622
(409 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0513700 Protein kinase-like domain containing protein 803 0.0
Os11g0519200 159 3e-39
Os11g0513000 Hypothetical protein 144 2e-34
Os11g0518132 95 1e-19
>Os11g0513700 Protein kinase-like domain containing protein
Length = 409
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/409 (94%), Positives = 388/409 (94%)
Query: 1 MATEKKVNKLSVANLTSDDSFYPVIVPGNSKIEIQSRVRNLTVYAIKIPGSVAYNAMLLY 60
MATEKKVNKLSVANLTSDDSFYPVIVPGNSKIEIQSRVRNLTVYAIKIPGSVAYNAMLLY
Sbjct: 1 MATEKKVNKLSVANLTSDDSFYPVIVPGNSKIEIQSRVRNLTVYAIKIPGSVAYNAMLLY 60
Query: 61 SEGQQEKCLAVRRRSEHAHTLYEILRNCSHRNIIQPMGVWEEMETNLAFIVFPCSDGVVT 120
SEGQQEKCLAVRRRSEHAHTLYEILRNCSHRNIIQPMGVWEEMETNLAFIVFPCSDGVVT
Sbjct: 61 SEGQQEKCLAVRRRSEHAHTLYEILRNCSHRNIIQPMGVWEEMETNLAFIVFPCSDGVVT 120
Query: 121 SIPKEALFDVEDATNAESYTFGFSDQGCRIFREICMAVRYINVLYDEEKIPLKALDLDES 180
SIPKEALFDVEDATNAESYTFGFSDQGCRIFREICMAVRYINVLYDEEKIPLKALDLDES
Sbjct: 121 SIPKEALFDVEDATNAESYTFGFSDQGCRIFREICMAVRYINVLYDEEKIPLKALDLDES 180
Query: 181 KIFYQSKAKGDYHVLLTDIKMEISPTGNVRKNRRAKGKVSSTGVPTVDDVKTANWNGLGQ 240
KIFYQSKAKGDYHVLLTDIKMEISPTGNVRKNRRAKGKVSSTGVPTVDDVKTANWNGLGQ
Sbjct: 181 KIFYQSKAKGDYHVLLTDIKMEISPTGNVRKNRRAKGKVSSTGVPTVDDVKTANWNGLGQ 240
Query: 241 FXXXXXXXXXXXXXXXXXXXXXGKESVKYEDLVWEPGLWESSTKVQLVRDVYWCYNKNKN 300
F GKESVKYEDLVWEPGLWESSTKVQLVRDVYWCYNKNKN
Sbjct: 241 FLKKLHKDLKLHIELSHLSEELGKESVKYEDLVWEPGLWESSTKVQLVRDVYWCYNKNKN 300
Query: 301 RISTLKNKTALGLKSFIDKLEVNKSRAPDKQINDDNLYESLFFLRVYMVAHKDDTIKGYS 360
RISTLKNKTALGLKSFIDKLEVNKSRAPDKQINDDNLYESLFFLRVYMVAHKDDTIKGYS
Sbjct: 301 RISTLKNKTALGLKSFIDKLEVNKSRAPDKQINDDNLYESLFFLRVYMVAHKDDTIKGYS 360
Query: 361 GTMEMMHDKKAIVRLLMIERPEYMVTLISAIRKLGWIRQSPFCAWITST 409
GTMEMMHDKKAIVRLLMIERPEYMVTLISAIRKLGWIRQSPFCAWITST
Sbjct: 361 GTMEMMHDKKAIVRLLMIERPEYMVTLISAIRKLGWIRQSPFCAWITST 409
>Os11g0519200
Length = 430
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 194/395 (49%), Gaps = 40/395 (10%)
Query: 30 SKIEIQSRVRNLTVYAIKIPGSVAYNAMLLYSEGQQEKCLAVRRRSEHAHTLYEILRNCS 89
+I+++ R L + KIPG+ + A S G C+A+ + E A T+Y IL C
Sbjct: 29 GQIKVEQRSCELAIDDSKIPGTSLHRATC--STGP---CVAISKPIEEAKTIYRILCQCD 83
Query: 90 HRNIIQPMGVWEEMETNL-AFIVFPCSDGVVTSIPKEALFDVEDATNAESYTFGFSDQGC 148
H N+++P+GVW+ + A++V + + S +E +F VED S+ +GFS+ G
Sbjct: 84 HPNVLKPIGVWKNPSDDASAYLVLEEVEASLGSKDREFMFSVED-----SFIYGFSNIGF 138
Query: 149 RIFREICMAVRYINVLYDEE----------KIPLKALDLDESKIFYQSKAKGDYHVLLTD 198
+IFR +C V YIN LY IPL + L+ S IFY+ +G+ V++TD
Sbjct: 139 KIFRALCNVVNYINGLYMNSAAGTSSSVAGAIPLTPIKLNSSMIFYKLMVEGEVEVVVTD 198
Query: 199 IKMEISPTGNVRKNRRAKGKVSSTGVPTVDDVKTANWNGLG-----QFXXXXXXXXXXXX 253
+ P V+K R+ + K T++DV+ NW +G +
Sbjct: 199 FCVR-QPRDLVKKTRKGRPKEV-----TIEDVQQFNWRAVGLCLKKMYGPEGNVNEELKD 252
Query: 254 XXXXXXXXXGKES-VKYEDLVWEPGLWESSTKVQLVRDVYWCYNKNKNR------ISTLK 306
+E V Y+ ++W PG WE++ K Q +R+++W +K +++ I T K
Sbjct: 253 LAAYLEGSKPEEGPVTYDGILWHPGAWEANIKTQFIREIFWLIDKERDKLKTKKLIETEK 312
Query: 307 NKTALGLKSFIDKLEVNKSRAPDKQINDDNLYESLFFLRVYMVAHKDDTIKGYSGTMEMM 366
K+ + +K + K+ A K++ ++NL +SL LR Y+VAH D + ++
Sbjct: 313 GKSLIKIKRTLGIAASLKNFA-GKELQENNLLDSLEHLRTYIVAHPDMSYNSTDEQDKLK 371
Query: 367 HDKKAIVRLLMIERPEYMVTLISAIRKLGWIRQSP 401
DK RL+ + +YM+ L IR L WI +SP
Sbjct: 372 FDKVRCERLIQKVKGDYMIKLRKEIRNLEWITESP 406
>Os11g0513000 Hypothetical protein
Length = 101
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 80/95 (84%)
Query: 268 KYEDLVWEPGLWESSTKVQLVRDVYWCYNKNKNRISTLKNKTALGLKSFIDKLEVNKSRA 327
+YEDLVWE GLWE ++KVQ +R++YW YN ++ +IS LK + +LGLKS IDKLEVNKSR
Sbjct: 4 RYEDLVWEAGLWEHNSKVQFIREIYWHYNNDEAKISQLKLRASLGLKSCIDKLEVNKSRE 63
Query: 328 PDKQINDDNLYESLFFLRVYMVAHKDDTIKGYSGT 362
P+K+IND +LY SLFFLRVYMVAH+DD IKGYSG
Sbjct: 64 PNKEINDKSLYNSLFFLRVYMVAHRDDLIKGYSGA 98
>Os11g0518132
Length = 218
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 18/219 (8%)
Query: 188 AKGDYHVLLTDIKMEISPTGNVRKNRRAKGKVSSTGVPTVDDVKTANWNGLGQFXXXXXX 247
A+G Y +L + E+ N +++ + G+ + PTVD +K NW F
Sbjct: 2 AEGQYQILFGNFYTELP---NHMRDKNSCGRKA----PTVDVIKRLNWEAAATFLDELHK 54
Query: 248 XXXXXXXXXXXXXXXGKES--VKYEDLVWEPGLWESSTKVQLVRDVYWCYNKNK-NRIST 304
K++ Y DL+WEP LW + K+ +R+++WC ++ R
Sbjct: 55 NMLEPNDEMKHLKDKLKKNPPANYSDLLWEPSLWTTYVKIHFLREIFWCIESDEVTRKLV 114
Query: 305 LKNKTALGLKSFIDKLEVNKSRAPDKQINDDNLYESLFFLRVYMVAHKDDTIKGYSGTME 364
L+ LG++S + KL + + + +L S+ FLR +VAH+D T Y G
Sbjct: 115 LRKMDPLGIESCMVKLGYSAGK-------EKSLLHSIKFLRKRVVAHQDTTYLNYKGDKN 167
Query: 365 MMHDKKAIVRLLMIE-RPEYMVTLISAIRKLGWIRQSPF 402
+ + K +V LL+ + + +YM+ L+S IR+LGW+ +SP
Sbjct: 168 DVGECKRLVELLVHKSKADYMIELVSHIRQLGWVMESPI 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,084,008
Number of extensions: 440505
Number of successful extensions: 1067
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1059
Number of HSP's successfully gapped: 4
Length of query: 409
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 306
Effective length of database: 11,657,759
Effective search space: 3567274254
Effective search space used: 3567274254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)